Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02150 ATGAGTCGGTATGATAGTCGCTCCGGTGATCCTACTTCTTACCGTGACCGGAGGAGCGATTCGGGACTAGGTGCATCTACAGGGTATGGTGGCTCCATCAATTCTTCCTCAAGCAGAAGGGATTATGATGATCCTGGATCACCGAGGAAAGTGAGCTTGGATGGGTTGTCTCGTTTTGAGAAGAACTTCTACAATGAATCGCCATCTGTGAAGGCAATGACAGAGGCAGAGGTTAATGAGTATCGGCAGCGGAGGGAAATAACCGTTGAAGGCCGAGACGTCCCAAAACCTGTCAAGAGCTTTCATGATGTTGGACTTCCAGATTATGTTCTAcaagaaattacaaaagctGGCTTTGTGGAACCTACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGCATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTATTGCCTGCAATAGTGCATGTTAATGCCCAGCCAATTCTTGatcCTGGTGACGGTCCCATTGTTTTAGCTTTGGCTCCAACCCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAATTTGGTTCATCGTCCAGGATTAAGAGTACATGCATATATGGTGGGGTTCCGAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCAACTCCAGGAAGGTTGATTGACATGATTGAATCAAATCATACAAATTTGCGCAGGGTCACATACCTTGTGTTGGACGAGGCTGATAGGATGTTAGATATGGGATTTGAACCTCAGATACGGAAGATTGTCTCTCAGATTCGTCCTGATCGCCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAACTGGCAAAACAGTTCCTTTATGATCCATACAAAGTTGTTATAGGATCTCCGGACTTGAAAGCTAACCATGCAATCCGGCAATATGTTGACATTGTTTCTGAAAAACAGAAATATGATAAattAGTAAAATTGCTGGAGGACATCATGGATGGTAGTCGAATACTGATATTTATGGATACCAAGAAAGGATGTGATCAGGTTACTCGCCAGCTCCGGATGGATGGTTGGCCTGCACTGTCAATTCATGGAGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACCGCAACAGATGTTGCTGCACGTGGTTTAGATGTGAAGGACGTGAAATATGTGATAAATTATGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGTATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCTAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGGCAGAAAGTGAGTCCTGAATTGGCAGCGATGGGACGTGGTGCTCCTCCTCCACCTTCAGGTTATGGAGGTTTCCGGGACCGCGGGAGAGGTTATGGCGGTGGTCGCCCATG 1511 0.4507 MSRYDSRSGDPTSYRDRRSDSGLGASTGYGGSINSSSSRRDYDDPGSPRKVSLDGLSRFEKNFYNESPSVKAMTEAEVNEYRQRREITVEGRDVPKPVKSFHDVGLPDYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLALAPTRELAVQIQQEATKFGSSSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLAKQFLYDPYKVVIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPPPSGYGGFRDRGRGYGGGRP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02150 503 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Bva08g02150 503 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Bva08g02150 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Bva08g02150 503 CDD SF2_C_DEAD 318 448 - -
Bva08g02150 503 Gene3D - 311 477 IPR027417 -
Bva08g02150 503 PANTHER LD32873P 53 490 - -
Bva08g02150 503 MobiDBLite consensus disorder prediction 474 503 - -
Bva08g02150 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Bva08g02150 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 490 - -
Bva08g02150 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Bva08g02150 503 SMART helicmild6 358 439 IPR001650 -
Bva08g02150 503 CDD DEADc_DDX5_DDX17 110 306 - -
Bva08g02150 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Bva08g02150 503 MobiDBLite consensus disorder prediction 1 53 - -
Bva08g02150 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Bva08g02150 503 MobiDBLite consensus disorder prediction 25 41 - -
Bva08g02150 503 MobiDBLite consensus disorder prediction 1 17 - -
Bva08g02150 503 Gene3D - 62 309 IPR027417 -
Bva08g02150 503 SMART ultradead3 118 321 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02150 Bva-Chr8 14168156 14173109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02150 86 459 Eukaryotic Initiation Factors Gene Family AT3G19760 34.667 8.70e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02150 K12823 - gmx:100790464 897.501