Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02141 atGAACATGAACATCTCTTCTAGAAATGGTAACGGAACCACCCAGGCTTGCGCTCCTTGTAAATACCAACGCAGGAAGTGCGCTTCTGACTGCATTCTCGCACCTTATTTTCCTCACGATCGCCACAAGCAATTCATCAACGCCCATAAATTGTTTGGTGTCAGCAACATCAATAAAATCGTTAAGAACCTTAGCCCTCTCCAAAAGGACCAAGCCATGCGCACCGTCATCATTGAATCTGATATCAGAGCCAACGACCCAGTTGGCGGTTGCTGTAGAATCATTCAAGCCCTTCAAGCCGAGATCGAATACTGTAAGGCCGAGCTCGATTTGGTCCTTCAACAACTAGCCATTGTCCGAGCACAAGCTCAAGCTCATCATGTTTACGACGTAGATGATCACCGTCAACATCAAGTTATCAATGGCGCCGCTGATCCTTTGAACTTGTATAACCCCGCGGCACCGtctcattatcattatcattatcttcAACCACAACAAGGAGATCATCGTCGAGAGCAGTACATTATGGCGCAATTAGACGATAGTCACAACACGCTGCAGCAGCAAGATGTTAGTGCATGGACGATGCACAATTCTGTGTCATTGTCTTTGCATGGCAACAATAATGGTCATGGTGGTGCTGATGATTATGATCATGATCAGAAACCAATAGTGTTTCAGATGCCTTGTGATGAAAGGAATGAACTCAGATTCCAGCCTCAAGAATTAGTTGATCGCAGTGATGAAGGGGTTTTGTTTAAGGTAGATGATGGAGAAGTAATAAACGCAGAGCCTGAGTGCATGCAACTAGCTGTTGATCAGGATCTGAAAGGTGCAGCTACTTTGTTTACTCTTACAAATTGTACCAGCTGCGATCAAGTAATTAATTCATGTTA 899 0.4349 MNMNISSRNGNGTTQACAPCKYQRRKCASDCILAPYFPHDRHKQFINAHKLFGVSNINKIVKNLSPLQKDQAMRTVIIESDIRANDPVGGCCRIIQALQAEIEYCKAELDLVLQQLAIVRAQAQAHHVYDVDDHRQHQVINGAADPLNLYNPAAPSHYHYHYLQPQQGDHRREQYIMAQLDDSHNTLQQQDVSAWTMHNSVSLSLHGNNNGHGGADDYDHDQKPIVFQMPCDERNELRFQPQELVDRSDEGVLFKVDDGEVINAEPECMQLAVDQDLKGAATLFTLTNCTSCDQVINSC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02141 299 Coils Coil 95 115 - -
Bva08g02141 299 Pfam Lateral organ boundaries (LOB) domain 16 111 IPR004883 -
Bva08g02141 299 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Bva08g02141 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 221 - -
Bva08g02141 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 10 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02141 Bva-Chr8 14111943 14113431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02141 15 127 AS2 family AT3G13850 68.142 2.33e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva08g02141 LOB 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02141 - - pvu:PHAVU_010G138500g 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02141 08 14111943 14113431 Bva02g02285 02 22678904 22680632 BWGD