Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02137 ATGTTTTCCTATCAAAATGCAGGAATATCAATAGCAGGAGTACTAGTACTTGCGCTCGCATTTTTCAGTCTTACCATGCTTGGATGCTGCAGTTGTAGTCGCACGTCATCTCTTCCAACAAGACAAGCAAATGAGAAGTCCTCTGGTTGTAAAAGTTTAGAATCTCATTCGATCACATTCCAGTATAAGAAAGACGCAGGGAGTGTACAAGGTACTCACCACACTGATTGTAGTATCTGTTTGACCGCCTTTGAAGAAGACGACTGCATGCGGCAGCTTAGCAACTGCAAACACATCTTTCATAAAGTTTGCATTGATCAGTGGCTTGCCTCTCATTCTGGCTGCCCATTGTGCCGTACTAAGATTGACAAAGTGGATTCTCCTAATGGAATAGTGACTTCAGAAAGATGGCCAGATGATCTTGATCATTGTTA 434 0.424 MFSYQNAGISIAGVLVLALAFFSLTMLGCCSCSRTSSLPTRQANEKSSGCKSLESHSITFQYKKDAGSVQGTHHTDCSICLTAFEEDDCMRQLSNCKHIFHKVCIDQWLASHSGCPLCRTKIDKVDSPNGIVTSERWPDDLDHC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02137 144 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Bva08g02137 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 45 134 IPR044675 -
Bva08g02137 144 SMART ring_2 77 118 IPR001841 -
Bva08g02137 144 Pfam Ring finger domain 76 119 IPR001841 -
Bva08g02137 144 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 45 134 - -
Bva08g02137 144 SUPERFAMILY RING/U-box 76 125 - -
Bva08g02137 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 128 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02137 Bva-Chr8 14092138 14093006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02137 9 132 C3H Transcription Factor Family AT5G17600 35.915 8.80e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02137 - - gmx:102661636 145.976