Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02113 ATGGCCGTTAATGTTGTTCAGCCAACTGCTCTGACAACCTTATCCATTACAAACACTTTCGAACATAAGACGCAAAAACCCGGAATTTATGTGGGTTACTCCAGCAATTACAAGAAGAATCCAGTTCGGACCTTATCGATCAGAAAAGGCAGCTCCTTGGTGTTTGCCTGTCtctctcctcctcctcctccctCTTCATCAATCTCTTCATCCAGCAGTAAACCCAGTTCATCTCTTTCAATTAGGCTCTACGTCAGTGGGCTATCTTTCCGTACTACTGAAGAGAGCTTGCGAAATGCATTTAAGAATTTTGGTGAACTTATGGAAGTCAATCTCGTGATAGACAAAATAGCAAATAGACCTAGAGGGTTTGCGTTTCTTCGTTATGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGTAGAGTCATATTTGTGGAAGTTGCCAAGCCAAGATCAGAGCTACGCCAAAGATATAAGCAAAACCCTAGATA 518 0.3977 MAVNVVQPTALTTLSITNTFEHKTQKPGIYVGYSSNYKKNPVRTLSIRKGSSLVFACLSPPPPPSSSISSSSSKPSSSLSIRLYVSGLSFRTTEESLRNAFKNFGELMEVNLVIDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRYKQNPR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02113 172 SUPERFAMILY RNA-binding domain, RBD 68 169 IPR035979 GO:0003676
Bva08g02113 172 PANTHER RNA-BINDING PROTEIN 1 34 170 - -
Bva08g02113 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Bva08g02113 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 152 IPR000504 GO:0003723
Bva08g02113 172 SMART rrm1_1 82 155 IPR000504 GO:0003723
Bva08g02113 172 PANTHER TRANSFORMER-2-RELATED 34 170 - -
Bva08g02113 172 Gene3D - 59 170 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02113 Bva-Chr8 13956315 13958475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02113 83 170 Eukaryotic Initiation Factors Gene Family AT4G34110 30.435 1.89e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02113 - K13195 egr:104456410 181.415