Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02100 ATGGATTATTATACTCAACAGATGCAATTCGAAGCTAACCCTCTCGCCTACAATGGCGAGCAATTTCGTGAAGGAGTTTTTCGACATCAAGAAGAACtaggaggagaagaagagtTTTACTCAGGGCATGATTTTGATCCGAATGTTAATCTAAATGGTACGGGCGTTAAGATGAAGCCCGCATCCGATCGTCGTGATTCTTCTTCAGGAAAACTATTCGTTGGAGGCGTATCCTGGGAGACCACCGAAGACTCATTCTTTAAGTATTTCAACAAATATGGAGAAGTACTTGATTCTGTGATAATGATGAATAAACACTCTGGAAGGCCACGGGGGTTTGGGTTTGTAACTTTTGCTGATTCAGCTGTTGCAGATGAAGTCTTAGCACAGGAACATACCATAGATGGAAGAGTGGTTGAAATCAAGAGGACAGTCCCTAGGGAGGACATGGAAGTTGTAGGAGTGTCGAGAACACGGAAAATATTTGTTGGTGGAATACCACAATTTTTCACTGATGATGAGCTGAGGGAATACTTCTCCCCTTACGGTAGTATTGTTGAGCACCAGATAATGCTAGATCATAAGACTGGACGATCTAGAGGCTTTGGATTTGTTACTTTTGAGAATGAAGATTCAGTTGATAAGGTTTTTTCTGTGGGAAAAATTCATGAACTTGGAGGCAAGCAGGTCGAGATTAAGAGAGCTGAACCTAAAAGAGCTGGGATTGACTCCAGTGGGAGTTCACGAAAGTCATATGGTGGTTTTAGTGGTGGAACCGAGGGATTTGGTGGGCATAATGCTAGAGGTCGGAATGACGGGAAAAAGGGCAGGCCACAAGCAGAGACCAGCATGAGCGGGGCATATGGCAATTTCCATGGGAGCTATGGTGGAAGCTCTGCCACTCCATATGGTACCTACGGTGTCTATGGTTATGGGTTTGGGTACGGTGGACCAATGTATTGCTTTGGTGGTTATGGAGTTAATCCTTACGGTAATCCTACCACTGGTTATGGAGGCGTTCCTGGTTATGGGGATGTGAATGCATATGGAAGAGCGTGTAATTATAATCGGGCTGGTGGCTATGACAGTGGCAAAGTAGTTGAGAAGGATGCTGGTTATAGTACTGGAAGATACCATCCTTACTCGAAGTG 1151 0.437 MDYYTQQMQFEANPLAYNGEQFREGVFRHQEELGGEEEFYSGHDFDPNVNLNGTGVKMKPASDRRDSSSGKLFVGGVSWETTEDSFFKYFNKYGEVLDSVIMMNKHSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEIKRTVPREDMEVVGVSRTRKIFVGGIPQFFTDDELREYFSPYGSIVEHQIMLDHKTGRSRGFGFVTFENEDSVDKVFSVGKIHELGGKQVEIKRAEPKRAGIDSSGSSRKSYGGFSGGTEGFGGHNARGRNDGKKGRPQAETSMSGAYGNFHGSYGGSSATPYGTYGVYGYGFGYGGPMYCFGGYGVNPYGNPTTGYGGVPGYGDVNAYGRACNYNRAGGYDSGKVVEKDAGYSTGRYHPYSK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02100 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 62 381 - -
Bva08g02100 383 PANTHER BOULE-RELATED 62 381 IPR037366 GO:0003729
Bva08g02100 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 228 IPR000504 GO:0003723
Bva08g02100 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 139 IPR000504 GO:0003723
Bva08g02100 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 237 IPR000504 GO:0003723
Bva08g02100 383 SUPERFAMILY RNA-binding domain, RBD 157 266 IPR035979 GO:0003676
Bva08g02100 383 MobiDBLite consensus disorder prediction 236 283 - -
Bva08g02100 383 SMART rrm1_1 160 233 IPR000504 GO:0003723
Bva08g02100 383 SMART rrm1_1 71 142 IPR000504 GO:0003723
Bva08g02100 383 SUPERFAMILY RNA-binding domain, RBD 63 150 IPR035979 GO:0003676
Bva08g02100 383 Gene3D - 151 296 IPR012677 -
Bva08g02100 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Bva08g02100 383 Gene3D - 68 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02100 Bva-Chr8 13897251 13900003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02100 72 257 Eukaryotic Initiation Factors Gene Family AT1G22760 30.583 6.30e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02100 K12741 - gmx:100818080 454.136