Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02096 ATGGCGACTCAAATGAGCAAAAAGCGGAAGTTTGTAGCCGATGGAGTTTTCTTTGCTGAGCTCAATGAGGTTCTGACCAGGGAGCTCGCAGAGGATGGGTATTCTGGGGTTGAAGTTAGGGTTACGCCTATGCGAACTGAGATCATCATAAGAGCGACTCGTACCCAAAATGTTCTCGGTGAGAAAGGCAGGAGAATAAGGGAGCTGACATCAGTTGTTCAGAAGCGTTTTAAGTTCCCGGAAAATAGTGTTGAGCTGTATGCTGAGAAAGTCAACAACAGAGGGCTATGTGCTATTGCTCAGGCAGAGTCTTTACGTTACAAGCTTCTTGGAGGACTTGCTGTCCGGAGgGCTTGCTATGGTGTCCTAAGGTTTGTTATGGAAAGTGGAGCAAAAGGTTGCGAGGTTATTGTTAGCGGCAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAGTTCAAGGATGGTTACATGATATCATCTGGTCAACCTGTCAAGGAATATATTGACTCTGCTGTGAGGCACGTGCTTCTGAGACAGGGTGTCCTTGGGATCAAGGTGAAAATTATGCTTGACTGGGATCCTAAGGGTAAGCAAGGTCCAACCAAACCGTTGCCTGATGTGGTCACTATCCATCCAccaaaggaggaagaagattaCACTGTCAGACCCTTGCAACAGCCCACTGCCAACATAGAGATTCCGGCAGTTTA 710 0.462 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDVVTIHPPKEEEDYTVRPLQQPTANIEIPAV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02096 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Bva08g02096 236 Gene3D - 93 219 IPR036419 -
Bva08g02096 236 CDD 40S_S3_KH 15 95 - -
Bva08g02096 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Bva08g02096 236 Gene3D - 1 91 IPR015946 -
Bva08g02096 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Bva08g02096 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Bva08g02096 236 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 233 - -
Bva08g02096 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 233 - -
Bva08g02096 236 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bva08g02096 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Bva08g02096 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02096 Bva-Chr8 13874144 13876807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02096 1 234 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.607 3.99e-151 419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02096 08 13874144 13876807 Bva02g02238 02 22393090 22395528 ECH
Bva06g00548 06 5859827 5862102 Bva08g02096 08 13874144 13876807 ECH
Bva05g01095 05 5615540 5618216 Bva08g02096 08 13874144 13876807 ECH
Bva08g02096 08 13874144 13876807 Bva08g02096 08 13874144 13876807 ECH