Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02092 atgAGCAGGAGTGCAAATGAGATCAACAAAGGTGCTTGGTCcagagaagaagatgaaaccCTCACCAATTATGTCACACTCCATGGAGAAGGGAAATGGCAAAAAGTTGCCCAGAATGCAgGTTTACAGAGATGTGGAAAGAGTTGCAGACAAAGATGGCTGAACTATTTAAAGCCTGGTATAAAGAGAGGTGACATCTCTGTGGATGAAGAGGACATGATTATAAGACTTCATCATCTCCTTGGTAACAGGTGGGCACTGATAGCGAAAAGGCTCCCGGGACGAACAGACAATGAAATCAAGAACTATTGGAACACAAATTTGTCCAAGAAGTTGCAGACAAGACCCACCGCATGGTCACCACCACCAGCTGCTTCAGCCAAACATCACTCCAAATATGCAGAGGAAAAAGCCAAGCATAACAATATTGTAACCTTAGAAGCTCCCAGGCCAACCAGAGCTAAAGCTGTGTACTATGGATCTGATCATAAAAGAAGCAGTCCCAGTTCACCAAATCAAATGGAGGGTGATGATGATGCCTCTGatcttaattttctcatcGATGACATCGATCAGAACCAGCTTCTGATCCCAGAGCCTCCACTGGAGAATATTGAAGACCAGAATACTAATAAGGTAGAGTTGCATAACAATTCTAGTTCATCATCTTCTGATTTTCATCAACTCTTGCCAGAAATAATGTTTGATCCTCTGGATAGCTTTCTGGATGTGGAACTCAAAAGGGTTGCTTCATTTCTTGGACTAGAAGACCTCTG 776 0.4111 MSRSANEINKGAWSREEDETLTNYVTLHGEGKWQKVAQNAGLQRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHHLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQTRPTAWSPPPAASAKHHSKYAEEKAKHNNIVTLEAPRPTRAKAVYYGSDHKRSSPSSPNQMEGDDDASDLNFLIDDIDQNQLLIPEPPLENIEDQNTNKVELHNNSSSSSSDFHQLLPEIMFDPLDSFLDVELKRVASFLGLEDL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02092 258 Gene3D - 10 62 - -
Bva08g02092 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Bva08g02092 258 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 230 - -
Bva08g02092 258 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Bva08g02092 258 Gene3D - 67 143 - -
Bva08g02092 258 CDD SANT 12 57 IPR001005 -
Bva08g02092 258 MobiDBLite consensus disorder prediction 114 134 - -
Bva08g02092 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Bva08g02092 258 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Bva08g02092 258 MobiDBLite consensus disorder prediction 163 177 - -
Bva08g02092 258 CDD SANT 67 108 IPR001005 -
Bva08g02092 258 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Bva08g02092 258 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Bva08g02092 258 MobiDBLite consensus disorder prediction 160 180 - -
Bva08g02092 258 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bva08g02092 258 SMART sant 9 59 IPR001005 -
Bva08g02092 258 SMART sant 62 110 IPR001005 -
Bva08g02092 258 PANTHER MYB TRANSCRIPTION FACTOR 6 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02092 Bva-Chr8 13857694 13858718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02092 9 146 MYB Transcription Factor Family AT4G38620 53.191 7.21e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g02092 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02092 K09422 - gmx:100101858 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02092 08 13857694 13858718 Bva02g02231 02 22364613 22366332 ECH
Bva06g00545 06 5835584 5837003 Bva08g02092 08 13857694 13858718 ECH
Bva05g01100 05 5661552 5662740 Bva08g02092 08 13857694 13858718 ECH
Bva08g02092 08 13857694 13858718 Bva08g02092 08 13857694 13858718 ECH