Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02090 ATGGACAAAATGGATAGGAGTATTGCTTTATTTTCGTCCACAAAGACCAAGCTACTAATGAAGCTGAAGCCTGTTCAAAGCACAAGTGACAGGCAAGGAGCCTGGACACCAGAGAAAGGTAGCAAACTTGCTGATGTTATAGCAGCTCATGGTGCAAAAAGGTGGAAATCAATTGCATCCAAAGCAGGTCTTAATCGATGCGGTAGAAGTTGTAGGCTGAGATGGTTGAATTATCTAAGACCCAACATAGAGAGAGGCAACATATCAATCGAACAGGAGGATTTGATACTCAGGCTTCATAAACTTCTGGGAAACAGGTGGTCTTTGATTGCAGCAAGATTGCCATATCGAACAGATAATGAGATAAAGAACTACTGGAATTCACAtttgattaagaaaatgaaacaggAGGAGAGAAAAAGTGGGAATTCGGCAAGAGAATTTAGCAAATCTctggaaaagaaagaggtgGAGGAGATTCATCAAGAACATCTTGTAGAGAAGAAATCAACTGGAGTTGCTGAAAATCCAACATGGAAGAAAGTCCGAGTCGAGCCTCTGAGAAGGACATCCCTTTG 578 0.3893 MDKMDRSIALFSSTKTKLLMKLKPVQSTSDRQGAWTPEKGSKLADVIAAHGAKRWKSIASKAGLNRCGRSCRLRWLNYLRPNIERGNISIEQEDLILRLHKLLGNRWSLIAARLPYRTDNEIKNYWNSHLIKKMKQEERKSGNSAREFSKSLEKKEVEEIHQEHLVEKKSTGVAENPTWKKVRVEPLRRTSL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02090 192 Gene3D - 89 164 - -
Bva08g02090 192 Gene3D - 34 84 - -
Bva08g02090 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 79 IPR017930 -
Bva08g02090 192 SUPERFAMILY Homeodomain-like 31 126 IPR009057 -
Bva08g02090 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Bva08g02090 192 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Bva08g02090 192 Pfam Myb-like DNA-binding domain 86 130 IPR001005 -
Bva08g02090 192 CDD SANT 34 79 IPR001005 -
Bva08g02090 192 PANTHER TRANSCRIPTION FACTOR MYB23-LIKE 30 170 - -
Bva08g02090 192 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Bva08g02090 192 SMART sant 84 132 IPR001005 -
Bva08g02090 192 SMART sant 31 81 IPR001005 -
Bva08g02090 192 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Bva08g02090 192 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 30 170 - -
Bva08g02090 192 CDD SANT 91 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02090 Bva-Chr8 13849230 13851251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02090 31 134 MYB Transcription Factor Family AT5G40330 61.538 1.84e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g02090 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02090 K09422 - rcu:8284657 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02090 08 13849230 13851251 Bva02g02229 02 22358461 22359525 ECH
Bva08g02090 08 13849230 13851251 Bva08g02090 08 13849230 13851251 ECH