Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02088 ATGAGCAATTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGGGTTTGTGAGAGAAACCCAAGACCAGCGTGGAGGATTTCCTCCTCCTCATCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTCGCAGCCGAAGAGTGGAGATATGAGAATGCTATAGCGGGAGCAAATTCCAATGAAGAAGGTCCAAAGCTGGAAGATTTCTTGGGTTGCTACTCAAACTCACCCCTTGCTGAAACCAAAGTCTATTGCCAAGGAACCCAACAAGACCAAAGCCAGACCCAGAACAACATTTCCAAAATCAATGTTAATGTAGCCCCTAACTTCAATACCAACACTGATATAGAAACTGGGGAGACTCTCGCAAACCAATCTTTACTCCAATCTTTCCATGCATACAATGATAACGCACAAGCTCTTATTCCCAGCAATGGCATGTACAAGTCTTGGTTGGCCCCAAATCAGTTTAGTGATGCTAAGCCTCCAGCAGAAGCTAATGGGTCTAGTTTCCAATCACTTTCTCTAACCATGAGCCCCAGTGTACAAAATGGCATGGGTGCAATTTCTCCTGTTCAGGTAGGCGATGAGACTCGTAAACGATCAGTGGCAAAAGCTCTTGCTAGAGAACCTGTGCCTCGCAAATCCATTGATACTTTTGGCCAGAGAACTTCGCAATATCGTGGTGTTACTAGGCATAGATGGACTGGGAGATACGAGGCCCATTTGTGGGATAACAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGGAGGCaaggtGGTTatgacaaggaagaaaaagcAGCCCGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATCAATTTCCCTTTAAGCACTTATGAGAAAGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGCCTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTCGGATTGGAAGAGTTGCAGGAAACAAAGACTTATATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCTGAAGCATATGACATAGCAGCAATAAAGTTTAGGGGAACAAATGCTGTGACCAACTTTGATATTAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCCACATTGATTGGAGGTGACCTTGCAAAACGGTCTCCCAAAGACTCGGCTCCAGCCACCACTGAGGAATTCAATTCTGGTacctcatcatcatcacctCAGCAATCCCTTTTGGCTATAACAAGCAGCGAACACTCTGATGAATTGGCCAACATGGTATGGAATTCCAACAGTGATGAACAATCACTGTCACagcatgaaaatggaaacacCAAAAACAATGCCGCCGAATCGTCACAGCACGCCAGATCGAGCAGCAAGAACTCATTGAACCCGCAAAGCCCCAAGAGCTCGGTGGGACTAGCGAACGAGTTTGGATCAGAGAGTGGAGCTGATTATGGACACGGTTACTTCTCAGTGCAGCACCAGCAGGGGCCGAAGTACGATGACGGAAACAACGAGAATGATAACATGAATCGCATTGGAAATTTGGGTTTGGGTCAACAGGTTCCTATGTTTGCATTGTGGAATGAGTG 1682 0.4447 MSNWLGFSLTPHLRIDEGFVRETQDQRGGFPPPHPHLSVMPLRSDGSLCVAAEEWRYENAIAGANSNEEGPKLEDFLGCYSNSPLAETKVYCQGTQQDQSQTQNNISKINVNVAPNFNTNTDIETGETLANQSLLQSFHAYNDNAQALIPSNGMYKSWLAPNQFSDAKPPAEANGSSFQSLSLTMSPSVQNGMGAISPVQVGDETRKRSVAKALAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASAYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTNAVTNFDISRYDVKRICSSSTLIGGDLAKRSPKDSAPATTEEFNSGTSSSSPQQSLLAITSSEHSDELANMVWNSNSDEQSLSQHENGNTKNNAAESSQHARSSSKNSLNPQSPKSSVGLANEFGSESGADYGHGYFSVQHQQGPKYDDGNNENDNMNRIGNLGLGQQVPMFALWNE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02088 560 MobiDBLite consensus disorder prediction 515 534 - -
Bva08g02088 560 CDD AP2 232 298 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 SUPERFAMILY DNA-binding domain 331 392 IPR016177 GO:0003677
Bva08g02088 560 ProSiteProfiles AP2/ERF domain profile. 233 296 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 64 509 - -
Bva08g02088 560 PRINTS Ethylene responsive element binding protein signature 372 392 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 509 - -
Bva08g02088 560 MobiDBLite consensus disorder prediction 407 439 - -
Bva08g02088 560 MobiDBLite consensus disorder prediction 459 506 - -
Bva08g02088 560 SUPERFAMILY DNA-binding domain 232 298 IPR016177 GO:0003677
Bva08g02088 560 Pfam AP2 domain 332 382 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 Pfam AP2 domain 233 288 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 Gene3D AP2/ERF domain 232 298 IPR036955 GO:0003700|GO:0006355
Bva08g02088 560 Gene3D AP2/ERF domain 332 392 IPR036955 GO:0003700|GO:0006355
Bva08g02088 560 MobiDBLite consensus disorder prediction 459 509 - -
Bva08g02088 560 ProSiteProfiles AP2/ERF domain profile. 332 390 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 CDD AP2 331 392 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 SMART rav1_2 332 396 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 SMART rav1_2 233 302 IPR001471 GO:0003700|GO:0006355
Bva08g02088 560 MobiDBLite consensus disorder prediction 420 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02088 Bva-Chr8 13839193 13843016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02088 1 419 AP2-EREBP Transcription Factor Family AT1G72570 53.363 9.24e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva08g02088 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02088 K09285 - gmx:100805489 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02088 08 13839193 13843016 Bva08g02088 08 13839193 13843016 ECH