Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02082 ATGGCGTCTCACGAGCAAGCCCTGGTTTCCCTTCTTAATCATGTAGCCCTATCATTGGACGGCGCCGTTCTGGGGGTGGCATTAGCCTACGTCGCTGTCCGCTCTGTCCTCAAATTCACATTCAACTACACCGCTCTCGGTAAGCTCCGCAAAGCCCCTTCTGTCTCTGTTTCTGACCTTAGATCACTCCTCGGTGATTCCGAAACTGAAGGCAATTCCAAAAATTCTCAACTCGTAATCGTCCGGGGCACTGTCGAGGCCAAGTCCGTGGTCGATAGCAGCTGGAAGAGCTTCAGACCCGCCATATTGGTTTCTTGGGAGTCAGGTGACAAAGCTGTGGTGGTTCAAAGAACTCAAACGtgtatatataatgaatgGAAGGGGTTCTTTGGATGGACTTCTGATCTTCGAGCCCTATTTTCAAGATCTCGGAGACAACGAGAATCTACATCATTTAGAACGGTGCCTTTTGTTCTGATTGATGGTAGACAGTGGACGCACGCCGATTATGTcgttgtcaacttggatgggTCAAGACATCCCTTACCTCTCACAACAGTTTATCAGAAATTGCAACCCATAAATGCTTCTCCTTACACATTCTTGCAGGCACTGTTTGGTCATGAATATCCAGTTGGACTActggatgaagaaaaaattcttcCATTGGGAAAGGATATCAATGCTGTAGGCCTTTGCAGTTTTAGAGATGGAATTGCTGAGATTAGATCAAGCAAAGATCTACCATATTTTTTGACTGAAATGAGTAAAGATCAGCTGCTCGTTGATCTTGccttcaaaacaaatatactGTTTTGGGGTGGTATTATCTTTGGTTCGATGTCAGTTGCCATTCTTGGTTATGCTGCTATAAGGAACTGGAATAAATGGAAAGAGTGGAGGCTACGGAGACAGCTCCAGCAGCAAGGCCATGACGTCAGTAATGATGCTGATTCGCAGACTGCAGGTGATGATGAGCCAGAAGAGGTTCCTGATGGACAGCTATGTATTATATGCCTCATGAGGAGGAGGCGCTCTGTTTTTATTCCCTGTGGACATCTTGTTTGCTGCCAAGGGTGTGCCATATTGGTTGAACGTGAAGTGGCCCCTAAGTGTCCCGTTTGTAGGCAGCAAATTCGGAATTCTGTGCGgatatttgattcttg 1166 0.434 MASHEQALVSLLNHVALSLDGAVLGVALAYVAVRSVLKFTFNYTALGKLRKAPSVSVSDLRSLLGDSETEGNSKNSQLVIVRGTVEAKSVVDSSWKSFRPAILVSWESGDKAVVVQRTQTCIYNEWKGFFGWTSDLRALFSRSRRQRESTSFRTVPFVLIDGRQWTHADYVVVNLDGSRHPLPLTTVYQKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDINAVGLCSFRDGIAEIRSSKDLPYFLTEMSKDQLLVDLAFKTNILFWGGIIFGSMSVAILGYAAIRNWNKWKEWRLRRQLQQQGHDVSNDADSQTAGDDEPEEVPDGQLCIICLMRRRRSVFIPCGHLVCCQGCAILVEREVAPKCPVCRQQIRNSVRIFDS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02082 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Bva08g02082 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Bva08g02082 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 - -
Bva08g02082 388 MobiDBLite consensus disorder prediction 309 330 - -
Bva08g02082 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Bva08g02082 388 SUPERFAMILY RING/U-box 326 382 - -
Bva08g02082 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Bva08g02082 388 Pfam E3 Ubiquitin ligase 139 285 IPR022170 GO:0004842|GO:0006996|GO:0016567
Bva08g02082 388 SMART ring_2 336 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02082 Bva-Chr8 13809702 13813536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02082 328 385 C3H Transcription Factor Family AT3G06140 36.207 3.86e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02082 K15688 - qsu:112025569 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02082 08 13809702 13813536 Bva08g02082 08 13809702 13813536 ECH