Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02049 ATGGCCACAACCACCACTCCAGCGCCACCGCGACAACTGTCGCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCACCTGGGAACCAAAAACTGCGACTTTCAAATGGAACGCTACGTTTTCAAGCGCCGCAATGATGGCATTTACATCATCAACCTTGGCAAAACATGGGAGAAACTTCAGCTTGCTGCCAGGGTTATTGTTGCCATTGAGAACCCACAGGATATTATCGTTCAGTCTGCTAGGCCTTATGGTCAGCGAGCTGTTCTTAAATTTGCTCAGTACACTGGCGCCCATGCAATTGCAGGAAGGCACACTCCCGGAACATTCACCAATCAGCTCCAGACATCATACAACGAACCTCGTCTTCTCATCCTCACTGACCCTAGAACCGACCATCAGCCCATTAAGGAAGCCGCTCTCGGAAATATACCAACTATTGCTTTCTGTGACACTGATTCTCCAATGGGTTATGTGGACATTGGCATCCCTGCCAATAATAAGGGAAAGCACAGCATTGGTTGTCTATTTTGGCTTCTAGCTAGGATGGTACTGCAAATGCGGGGTACTATTCGTCCTGGGCTTAAGTGGGATGTGATGGTCGATTTATTCTTCTACAGAGAACCCGAGGAGGCCAAGCAACAAGAGGAAGACGAAGCACCAACTGCCCCTGAGTATGCCATTGCAGACTTCAATGCTGGTGCCATTGCTGCTGATGGCCAGTGGCCTGCCGCTGCAATTGATCAATCATGGACTGAAGCAGTTCCACCACAACCTATATCAGCTGTTCCAGTCGCCGGCCTGACCCCAGATGttgCAGGAGATTGGGGTGACTCTGCTGTCCCAGCACCACAAGTTCCTCCAACCGGAATTGAAAGTGTTCCTCCTACAGGCTGGGAATG 911 0.506 MATTTTPAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMGYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEDEAPTAPEYAIADFNAGAIAADGQWPAAAIDQSWTEAVPPQPISAVPVAGLTPDVAGDWGDSAVPAPQVPPTGIESVPPTGWE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Bva08g02049 303 TIGRFAM uS2_euk_arch: ribosomal protein uS2 15 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bva08g02049 303 MobiDBLite consensus disorder prediction 274 303 - -
Bva08g02049 303 Hamap 40S ribosomal protein SA [rps-0]. 7 248 IPR027498 GO:0003735|GO:0006412|GO:0015935
Bva08g02049 303 ProSitePatterns Ribosomal protein S2 signature 1. 20 31 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 Gene3D - 19 224 - -
Bva08g02049 303 PANTHER 40S RIBOSOMAL PROTEIN SA 12 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bva08g02049 303 Pfam Ribosomal protein S2 23 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 Pfam Ribosomal protein S2 120 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva08g02049 303 PANTHER 40S RIBOSOMAL PROTEIN SA 12 290 - -
Bva08g02049 303 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02049 Bva-Chr8 13634646 13636858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02049 1 286 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.564 2.91e-155 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02049 K02998 - gmx:100805318 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02049 08 13634646 13636858 Bva08g02049 08 13634646 13636858 ECH