LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g02041	ATGTGTGGAGGTGCTATTATCTCCGAATTCATTCCGGCGACGCCGGTGAGGTCTCGCCGTCTCACCGCCGATTACCTCTGGCCGGATTTGAAGAAATCCAGTTCAGGGAGGCACTTCTCAAAGCTCCTGAGGCCAGAGATTATCGATTTGGGCGATGATTTTGAAGCTGACTTCAGGGAATTCAAGGACGATTCTGATATCGATGTGGATGATGATGAGGATTTCATGGTCGATGTCAAGCCCTTTACTTTCTCAGCTGCCAAGCCTTCCAAGGGTGGTCTTTCTCGGGGATCTGCAAATGTTAAACCCACTGAACTTACTGGGCAAGCtgcaaagagaaagaggaagaatcAATATAGGGGAATCCGCCAGCGTCCATGGGGTAAATGGGCAGCTGAGATACGCGATCCAAGAAAGGGGGTTCGTGTCTGGCTTGGAACCTTCAACACAGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCAAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGATGCTCCAGGTGCTTCCCCAAAACGTTCTAAGGCAAATCCTGGTAAACAGAACTCTGCTCAGTCCATTGCCGACTTCAGTGCTGCTGCTAACAACTTTGAGGACTACTACGGTCTGGTTGAAGAGAAACCAATGGTTAATCAGTATACTAACATGGGCTTCTTCCCTGCCAATGGTGATGGACTCACATCCCTTGCACCATCCGATGATGTTACCTTCTGTTTCAGTTCTGATCAGGCGAGTAACTCGTTTGATCATTCAGACCTTGCATGGAGCGAACAGGGCTCCAAGACTCCTGAAATCTCATCCATGCTGTCAGCTCCCATGGAGGATGAAACTCAGTTTGTTCAATATGCAAGCCCAAAAAGCCTGCAATCTAACTCTCAGGATGTGATTTCTGCTCAAGAAAATTCTGGGAAGACACTGTCTGAGGAGCTTGCTGACATTGAATCTCAGTTGAAGTACTTTCAGGGACCTTATCTTGAAGGAGGCTGGGATGATGCTTCGTTGGAGACCTTGCTCAGCGGAGATGCTACTCAGGATGCTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTTCCTTCCATGGCCGGAGGAGTTTTCTG	1136	0.4762	MCGGAIISEFIPATPVRSRRLTADYLWPDLKKSSSGRHFSKLLRPEIIDLGDDFEADFREFKDDSDIDVDDDEDFMVDVKPFTFSAAKPSKGGLSRGSANVKPTELTGQAAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDDAPGASPKRSKANPGKQNSAQSIADFSAAANNFEDYYGLVEEKPMVNQYTNMGFFPANGDGLTSLAPSDDVTFCFSSDQASNSFDHSDLAWSEQGSKTPEISSMLSAPMEDETQFVQYASPKSLQSNSQDVISAQENSGKTLSEELADIESQLKYFQGPYLEGGWDDASLETLLSGDATQDAGNPMNLWSFDDLPSMAGGVF	378

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva08g02041	378	PANTHER	EREBP TRANSCRIPTION FACTOR	1	372	-	-
Bva08g02041	378	CDD	AP2	118	177	IPR001471	GO:0003700\|GO:0006355
Bva08g02041	378	PRINTS	Ethylene responsive element binding protein signature	119	130	IPR001471	GO:0003700\|GO:0006355
Bva08g02041	378	PRINTS	Ethylene responsive element binding protein signature	141	157	IPR001471	GO:0003700\|GO:0006355
Bva08g02041	378	Gene3D	AP2/ERF domain	117	176	IPR036955	GO:0003700\|GO:0006355
Bva08g02041	378	MobiDBLite	consensus disorder prediction	169	196	-	-
Bva08g02041	378	SMART	rav1_2	118	181	IPR001471	GO:0003700\|GO:0006355
Bva08g02041	378	ProSiteProfiles	AP2/ERF domain profile.	118	175	IPR001471	GO:0003700\|GO:0006355
Bva08g02041	378	PANTHER	DNA-BINDING DOMAIN	1	372	IPR044808	GO:0003700\|GO:0009873
Bva08g02041	378	SUPERFAMILY	DNA-binding domain	118	176	IPR016177	GO:0003677

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g02041	Bva-Chr8	13585321	13587983	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g02041	1	378	AP2-EREBP Transcription Factor Family	AT3G14230	43.382	9.16e-68	216

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Bva08g02041		AP2	1.9e-12	CL0081

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g02041	K09286		-	zju:107435298	419.468

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g02041	08	13585321	13587983	Bva08g02041	08	13585321	13587983	ECH

Showing 1 to 1 of 1 entries

Previous1Next