Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02036 ATGATGTTTCATTCCCAAGGAGCTTTGAAACAAACTTTTAGTCTCCTTGCTGTCACCTGCGACAAGAGCTTCGACCATGAACTTGAGAAGAAGCTCCCACAGAATCAGCCCAAATATCCTTTTCCTGAGTTAACTTCTTCAGGACGTCTGGAGGTTCAAACTCTAAACAATCCGGAAAAGGAGCAATTCCGTAAAGTTCTAGAATCTTATCAGCCAAATTTTGTATACTTACAAGGAGAACAGTTTGCGAGTGGTGAAGTTGGCTCACTGGTTTGGCGAGGTGTGGACTTATCCTCGTCCGAAGCTATATCAGAGCTCTTTGGACACACATTGCCAACAGCTGTTTATTTGGAAATTCCAAATGGAGAAACTTTGGCAGAGGTTCTTCATGCGAAGGGAGTCCCATACGTAATATACTGGAAGAATGCATTCTCTTGTTATGCTGCGTGCCATTTTCGCCAAGCGTTCCTTTTAGTGGTGCAGAGTTCTTCTACTCATACATGGGATGCATTCCACCTTGCACGTGCTTCTTTTAAGCTTTATTGTGTTCAAAACAATCATGTCCTTCCTGCTGAGAGCTGTGATGCTAGTAATGAGATGGGGCCACACCTTCTTGGTAACTGTCTGAAGGTCAATATTGACCCTCCTGATATatttgaagatgatgaagaaagtTCCTCAGAGTGTCTTCCTGCCATAAAGATATATGATGATGAAGTGAGCTTGAAACTTCTTGTCTGTGGTGCACCTTCAACCATGGACGTGCTACTATTGAGATCTTTGGAGGATGGACTCAGGGCACTTTTAATCATTGAAATACGTGGGAGCAAACTCCATGGCAAGTTTAGTGCCTCTCCACCACCTCTTCAGGCAGGCACATTTTCCCGAGGAGTTGTGACTATGCGATGTGATATATTGACCTGTACTTCTGCCCATATCTCACTTCTGGTGTCTGGTAGTGCACAGACTTGCTTCAATGATCAGcttttagagaatcatattaaaaatgagataattgaGAACAGTCAGCTAGTTCATGTCCAACTCAATGAGGGAAACAAACAGCCTGTCTCTGAACCTCGGAAATCTACCTCAATAGCCTGTGGATCAACAGTATTTGAAGTTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATCTTGAGGCATCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGTATTGCCAGCATTCAAGGGTTGCCTGTTGCTTCATTTGAGAAAGATGATGCTGAGCGTCTGCTTTTCTTTTACGAAAACTGCAAGAAAGATAGTTGTGCCAACAACATAATTTTCAGCAGTACCCCTGGTTGGTTGAAACCACCACCTCCTACTAGAAAGAGATGTGAACCAAGCCGAGAGGATAACCTTGACCTCAATGATGCTTATCAAAACatagaagaggaaaaagataCAAAAATGGTGAATGGGATTAGCACGCCACTAACTCCAGCCAGGCAGAGACTAAAAGTATCTGCTATGAGGCCAATCCCTCGTGCTCATCGCCATAGAATGACACCCTTTTCTGGACCTTCAGAGGCAAATGGTTATGACGGTGCCCAAGTGGAGGGTCATTTACCAATCATTGTTCCCACAAAGCGCAGTAGTATTGGGTCATCTTCTGCAACACAGCGAAAATCATTTTCAGGCTCATCTCAGTCCAAGCAGCTCATTTCCTTGAACCCGTTGCCTTTGAAGAAACATGGTTGTGGCAGAGGTTCAATGCAGACTTGCTCCGAGGAGGAATTCCTGAAAGATGTCATGGAATTTCTAATTATTCGGGGGCACAGTCGACTTATACCTCAAGGTGGTATTGCTGAGTTCCCAGATGCAGTACTCAATGGGAAACAGCTTGACCTTTACAACTTATATAAAGAGGTAGTTACAAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGATATTTTCAAAGATGAATAATTATACAGCCACCAATAGAATGACTGGGGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATATGAACTAGCACATGATGATGTTGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGAGACTGGGTGAATTGTGGCATATGTGGGGAGTGGGCCCACTTCGGCTGCGACAGGAGGCAAGGTCTTGGTGCTTTTAAGGATTATGCAAAGACAGATGGGCTAGAATACATATGCCCTCATTGTAGCGTTACAAATTTCAACAAGAAACCTGAAGGTGTGGCTAATGGGTATGCGCAGGCGTCAATGGCATCTAGACGACTCCTTTG 2324 0.4294 MMFHSQGALKQTFSLLAVTCDKSFDHELEKKLPQNQPKYPFPELTSSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQFASGEVGSLVWRGVDLSSSEAISELFGHTLPTAVYLEIPNGETLAEVLHAKGVPYVIYWKNAFSCYAACHFRQAFLLVVQSSSTHTWDAFHLARASFKLYCVQNNHVLPAESCDASNEMGPHLLGNCLKVNIDPPDIFEDDEESSSECLPAIKIYDDEVSLKLLVCGAPSTMDVLLLRSLEDGLRALLIIEIRGSKLHGKFSASPPPLQAGTFSRGVVTMRCDILTCTSAHISLLVSGSAQTCFNDQLLENHIKNEIIENSQLVHVQLNEGNKQPVSEPRKSTSIACGSTVFEVCMKLPQWALQILRHLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYENCKKDSCANNIIFSSTPGWLKPPPPTRKRCEPSREDNLDLNDAYQNIEEEKDTKMVNGISTPLTPARQRLKVSAMRPIPRAHRHRMTPFSGPSEANGYDGAQVEGHLPIIVPTKRSSIGSSSATQRKSFSGSSQSKQLISLNPLPLKKHGCGRGSMQTCSEEEFLKDVMEFLIIRGHSRLIPQGGIAEFPDAVLNGKQLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMNNYTATNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFNKKPEGVANGYAQASMASRRLL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02036 774 CDD PHD_ARID4_like 696 747 - -
Bva08g02036 774 SMART ARID_2 583 686 - -
Bva08g02036 774 SUPERFAMILY FYVE/PHD zinc finger 689 752 IPR011011 -
Bva08g02036 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 752 IPR013083 -
Bva08g02036 774 CDD ARID 588 686 - -
Bva08g02036 774 ProSiteProfiles ARID domain profile. 586 690 IPR001606 GO:0003677
Bva08g02036 774 SUPERFAMILY ARID-like 585 701 IPR036431 GO:0003677
Bva08g02036 774 MobiDBLite consensus disorder prediction 542 564 - -
Bva08g02036 774 Pfam ARID/BRIGHT DNA binding domain 589 686 IPR001606 GO:0003677
Bva08g02036 774 Gene3D - 581 689 IPR036431 GO:0003677
Bva08g02036 774 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 763 - -
Bva08g02036 774 SMART bright_3 587 691 IPR001606 GO:0003677
Bva08g02036 774 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 763 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02036 Bva-Chr8 13557481 13565291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02036 2 762 ARID Transcription Factor Family AT3G43240 61.307 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva08g02036 ARID 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02036 - - gmx:100820590 1263.06