Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02028 ATGGATTCTATCAACTCCTTCAAGGGATACGGTAAGGTAGATGAGCTGGAGCAGCGAGCATTCCGGAAGAAGACGCGTAAGCGTATCATCATCCTCGTCGTCTCCTCCGTAGTACTAGTCGCTGTCATCGTCGCCGCAGTTGCAGGGGTCCTCATAAATCAGCGCAACAGCTCATCGTCTTCGGATAACTCCGTCCCTGCCAGTGGGTTAACTCCGGCCGCCTCGCTCAAAGCGGTTTGCGATGTGACTCTGTACCCCGCCTCGTGCTATTCCAGCATCTCGTCTCTACCCGACTCCAACACCACCGACCCAGAAATGCTCTTCAACCTCTCTCTCCGCGTCGCCCTCTACGAGCTCTCCAAGCTCTCGCAGTACCCTTCTAAGCTCAGAGCCAATGCGATGGAACCCCGTCTTCAGAAGGCTATTGGTGTTTGTGGGACCGTTCTCGATGACGCGCTCGATCGACTCAACGAGTCGCTTTCGTCTCTGGAAATCGGCGGCGGCGAGAAGCACTTGTCTTCGGCGAAGATCGCCGACCTTAGAACCTGGCTCAGCGCCACCATTACCGACCAGGAAACCTGTTTGGATGCCCTCGAGGAATTGAATTCCACTGCGGGGAATGCAACTCTTCACAATGTGAGAACCGCCATGGCCAACTCCACCCAGTTCGCTAGCAATAGTTTGGCCATCGCCACCAAGATTCTCGTTCTGATCGGGATCTTCGACATTCCGATCCATCGGAGACTACTCGGGTTCGGAGGATCCGAGCCCGGATTCCCTGACTGGGTCGGCTCGGCTGAGAGGAGGCTGTTGCAGGAGAACACAACGACGCCACATTTGGTGGTGGCCAAGGACGGGAGTGGGCAATTTAAGACGATCAAAGAGGCAATGGCGACGGTTCCGAAGAAGAGTCCGACGAGGCACGTAATTTACGTGAAGGAAGGGGAGTACGTGGAGAACATAGATTTGGACAAAAACACATGGAATGTGATGATTTACGGTGACGGAAAGGACAAGACTATCGTCTCCGGCAGCTTGAACTACAATGACGGCACACCCACATTTGAAACTGCAACTTTTGCTGTGAAGGGGAAGGGATTCATTGCCAAGGACATAGCCTTCAAAAACACTGCAGGTGCAGATAAGCATCAGGCTGTGGCCTTCAGATCAGGCTCGGACATGTCCGTGTTCTATAGATGTTTATTTGATGGATTCCAGGACACCCTCTATGCCCATTCCAACCGCCAATTCTACCGAGACTGCGACATCACGGGTACCGTAGATTTCATATTTGGCAATGCAGCCGTTGTGTTCCAAAACTGCAACATTATGCCCAGGCAGCCCCTGCCAAACCAGTTCAACACCATCACGGCTCAGGGCAAAAAAGACCCAAACCAGAACTCTGCCATGTCTATCCAGAAGTGTAAAATCTCGGCACTGGATAAGCTTACCGCTCCAACCTA 1463 0.529 MDSINSFKGYGKVDELEQRAFRKKTRKRIIILVVSSVVLVAVIVAAVAGVLINQRNSSSSSDNSVPASGLTPAASLKAVCDVTLYPASCYSSISSLPDSNTTDPEMLFNLSLRVALYELSKLSQYPSKLRANAMEPRLQKAIGVCGTVLDDALDRLNESLSSLEIGGGEKHLSSAKIADLRTWLSATITDQETCLDALEELNSTAGNATLHNVRTAMANSTQFASNSLAIATKILVLIGIFDIPIHRRLLGFGGSEPGFPDWVGSAERRLLQENTTTPHLVVAKDGSGQFKTIKEAMATVPKKSPTRHVIYVKEGEYVENIDLDKNTWNVMIYGDGKDKTIVSGSLNYNDGTPTFETATFAVKGKGFIAKDIAFKNTAGADKHQAVAFRSGSDMSVFYRCLFDGFQDTLYAHSNRQFYRDCDITGTVDFIFGNAAVVFQNCNIMPRQPLPNQFNTITAQGKKDPNQNSAMSIQKCKISALDKLTAPT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02028 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 234 IPR035513 -
Bva08g02028 487 Pfam Pectinesterase 280 484 IPR000070 GO:0030599|GO:0042545
Bva08g02028 487 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Bva08g02028 487 Gene3D - 273 486 IPR012334 -
Bva08g02028 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 234 IPR035513 -
Bva08g02028 487 PANTHER PECTINESTERASE 8 482 - -
Bva08g02028 487 Pfam Plant invertase/pectin methylesterase inhibitor 76 230 IPR006501 GO:0004857
Bva08g02028 487 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 233 IPR006501 GO:0004857
Bva08g02028 487 PANTHER PECTINESTERASE 1-RELATED 8 482 - -
Bva08g02028 487 SUPERFAMILY Pectin lyase-like 277 482 IPR011050 -
Bva08g02028 487 SMART PMEI_2 71 230 IPR006501 GO:0004857
Bva08g02028 487 CDD PMEI-like_3 78 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02028 Bva-Chr8 13523346 13526488 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02028 1 487 Carbohydrate Esterase AT1G53840 60.163 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02028 - - lang:109360530 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02028 08 13523346 13526488 Bva08g02028 08 13523346 13526488 ECH