Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02022 ATGGGTGACTCGGGTGAAAGATCTAGTGATTCTTCGGCCGTTGAAGTAACCGGCAAGATCATGGTGGCAGCTATAATAGTCCTCTTCTTTGTGCTTGTGTTTGTTCTCTTCCTCCATCTCTATGCCAAATGGTTCTGGTGGCGCATTGAAGAATCCACCTCTTCCCAACCTCGCAGCCGCCGTCGCCGCCGGTTTGTCTTTACCCCTGGTCAAGACCCTGCTATCTACGGAGCTCAGCGAAGTGGGCTCGACCCTGCAGTCCTTAGGTCCTTACCTGTCTTAGTATTCCAACCAGAAGAGTTCAAAGATGGTTTGGAATGCGCTGTTTGCCTCTGCGAGCTTGTTCAAGGAGAAAAGGCTCGGATTTTACCCAAATGCAATCATGGGTTTCACGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACATGCCCCCTTTGTAGGAACCACGTCGATTCTGGATCCTCAAATTCCATTGGTAGTTCAGATGCTGCAGAAAATGCCTTGGAGAACAATGAATCAACGGCAGAAAATTCAGCCGCCGTGAGTAGCTCAGAGTCCCCAAATTTTCCGACAAATGTATTAATTTGGGGGAACCAGACCCAAGTAACTTCTACCGGTGCTTCTTCGGAAGTAGAAGGTCCTTCTCCTCAACCTCCTTGCTCCTCACCATCTcccacttcatcttcttcatcagcCAGTACTAGCAGTATTAGACGTCATGGAGTTTTGGTGATTGACATACCAAATGAGATCAATTCATCGGCTTTATCACCTTCTACTAGCAGGTTTGCTGAAGACGAGCTGAAATCTCCAATGACAACGAGATTGAGATCATTGAAGAGATTGTTAAGCAGAGACAAGAGATTATTAAGTCCTCGTAGTCCCAGTTCTATAGATGTGGAACAAGGAGGGAGAGGGCAGAATCAGATTGGCCTTtg 944 0.4566 MGDSGERSSDSSAVEVTGKIMVAAIIVLFFVLVFVLFLHLYAKWFWWRIEESTSSQPRSRRRRRFVFTPGQDPAIYGAQRSGLDPAVLRSLPVLVFQPEEFKDGLECAVCLCELVQGEKARILPKCNHGFHVDCIDMWFQSHSTCPLCRNHVDSGSSNSIGSSDAAENALENNESTAENSAAVSSSESPNFPTNVLIWGNQTQVTSTGASSEVEGPSPQPPCSSPSPTSSSSSASTSSIRRHGVLVIDIPNEINSSALSPSTSRFAEDELKSPMTTRLRSLKRLLSRDKRLLSPRSPSSIDVEQGGRGQNQIGL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02022 314 MobiDBLite consensus disorder prediction 156 189 - -
Bva08g02022 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Bva08g02022 314 PANTHER RING-H2 FINGER PROTEIN ATL3 7 304 - -
Bva08g02022 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 304 IPR044675 -
Bva08g02022 314 SUPERFAMILY RING/U-box 87 153 - -
Bva08g02022 314 MobiDBLite consensus disorder prediction 297 314 - -
Bva08g02022 314 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Bva08g02022 314 MobiDBLite consensus disorder prediction 204 239 - -
Bva08g02022 314 SMART ring_2 107 148 IPR001841 -
Bva08g02022 314 CDD RING-H2_EL5_like 106 149 - -
Bva08g02022 314 MobiDBLite consensus disorder prediction 288 314 - -
Bva08g02022 314 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02022 Bva-Chr8 13502964 13504729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02022 15 289 C3H Transcription Factor Family AT1G53820 45.270 1.57e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g02022 - - zju:107434456 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02022 08 13502964 13504729 Bva08g02022 08 13502964 13504729 ECH