Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g02016 ATGGCACCTGCAGCTGAGCACGACGAAGATTTTAAGGACGAGAAGAACCCTCGTCCTCTCGACGAGGATGATATCGCCCTCCTGAAAACCTATGGTTTAGGACCTTACTCCACAAGTATAAAGAAAGCGGAGAAGGAAATCAAAGAGATGGCTAAAAAGGTCAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCTAGCCAGTGGGATCTTGTTTCTGATAAGCAGATGATGCAGGAAGAACAGCCTCTTCAGGTGGCAAGGTGCACAAAGATAATAAATCCAAACTCTGAAGATGCCAAGTATGTGATCAATGTAAAACAGATCGCAAAGTTTGTTGTTGGGCTGGGTGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGAGttgatagaaataaatatcagATTCAAATTCCATTGCCTCCAAAAATTGATCCGAGTGTTACCATGATGACTGTTGAAGAAAAGCCTGATGTGACTTACAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAACTTCCCATGCTTCATCCGGAGAAATTTGTCAAACTAGGAATTGATCCTCCAAAGGGTGTACTTTGCTATGGTCCACCAGGAACTGGCAAAACACTTTTAGCCAGGGCTGTGGCTAATAGAACTGATGCATGTTTTATAAGGGTCATTGGAAGTGAACTTGTGCAGAAATATGTTGGCGAGGGGGCTCGGATGGTTCGTGAATTATTTCAGATGGCTCGTTCGAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCTATTGGAGGTGCCCGTTTTGATGATGGTGTTGGTGGAGACAATGAGGTTCAGCGCACAATGCTTGAAATTGTGAATCAGCTGGATGGATTCGATGCTCGTGGAAACATTAAAGTTTTGATGGCAACAAACAGGCCTGATACTTTAGATCCAGCTCTACTACGTCCTGGCCGATTGGATCGCAAGGTTGAATTCGGGCTTCCAGATTTGGAGAGTAGGACCCAGATATTTAAGATACACACAAGAACCATGAACTGTGAGAGGGATATACGATTTGAGCTTTTGGCACGGCTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGCGTATGCACTGAAGCTGGTATGTATGCTATTCGTGCCCGAAGGAAGACTGTGACGGAGAAAGATTTCCTGGATGCAGTAAATAAAGTCATCAAAGGTTACCAAAAGTTCAGTGCAACGCCCAAGTATATGGTCTACAACTG 1286 0.437 MAPAAEHDEDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKEMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g02016 428 Gene3D - 341 422 - -
Bva08g02016 428 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 8 426 - -
Bva08g02016 428 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 426 - -
Bva08g02016 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 418 IPR027417 -
Bva08g02016 428 Coils Coil 40 60 - -
Bva08g02016 428 Pfam AAA+ lid domain 362 405 IPR041569 -
Bva08g02016 428 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 100 411 IPR005937 GO:0005737|GO:0030163|GO:0036402
Bva08g02016 428 Gene3D - 160 339 IPR027417 -
Bva08g02016 428 Pfam ATPase family associated with various cellular activities (AAA) 207 339 IPR003959 GO:0005524|GO:0016887
Bva08g02016 428 MobiDBLite consensus disorder prediction 1 22 - -
Bva08g02016 428 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Bva08g02016 428 Gene3D - 34 159 IPR012340 -
Bva08g02016 428 CDD AAA 173 340 - -
Bva08g02016 428 SMART AAA_5 203 342 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g02016 Bva-Chr8 13479613 13483413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g02016 172 393 Calmodulin-binding Proteins AT3G56690 37.220 1.26e-41 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g02016 08 13479613 13483413 Bva08g02016 08 13479613 13483413 ECH