Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01990 ATGAACTCGTCCCCACAGAAAGTTATCTGCTATGAAACTCCTCGTAAGTTGTACGTTGGCAATCTTGCCAGGACTGTTCAACCAGCAGAGTTGAAAAACCTTTCTAGTAGATTTGGAACTGTGGTTAGTGTAAGAATTTTGCATGATACCAAAGCAGGGAAGAGGCGGATTTTTGGATTTCTATCGTTTCCTTCAGAGGCTAAACGTGATGCAGCAATGTCTCTTAATGGAATGGAACTTCACGGTCGTACCCTGGTAGTTTA 263 0.4259 MNSSPQKVICYETPRKLYVGNLARTVQPAELKNLSSRFGTVVSVRILHDTKAGKRRIFGFLSFPSEAKRDAAMSLNGMELHGRTLVV 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01990 87 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 87 - -
Bva08g01990 87 SMART rrm1_1 16 87 IPR000504 GO:0003723
Bva08g01990 87 PANTHER OS02G0815200 PROTEIN 2 87 - -
Bva08g01990 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Bva08g01990 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 87 IPR000504 GO:0003723
Bva08g01990 87 SUPERFAMILY RNA-binding domain, RBD 12 87 IPR035979 GO:0003676
Bva08g01990 87 Gene3D - 2 87 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01990 Bva-Chr8 13344848 13345666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01990 17 87 Eukaryotic Initiation Factors Gene Family AT3G16380 42.466 1.06e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01990 - - gmx:100792560 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01990 08 13344848 13345666 Bva08g01990 08 13344848 13345666 ECH