Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01984 ATGATGTCTCAACAAAGGCAATTCCAGATGGTGGGTGGCAACAATCCTGGGAAATACAATGATACAACTTTTAccaaaatttttgttggagGGTTAGCTTGGGAGACTCAGGGGGACACAATGAGAAGGTATTTTGAGCAGTTTGGGGAGATCCTTGAAGCTGTTGTTATCACAGACAAAAACACTGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAGTCAGCCATGAGGGCATGTCAGAACCCATCACCAGTTATAGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTGGGTGCAAACAAGAATCGTCCGCCCACTTCTTTACATGGTGTGGGAAGGTTCAGACCAGCACCTGGGCTAATGGCTACTCCTGCTTATCATGGCTCGTCGTCTACATATTTCCCTCAACCCACGGGACAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAGGAAACCATGTATCCcatgAATTGCTATAGTGTCTATGGAGGACAACAGTTTTCACCTTATTACCCTTCAACTGGGGCATCTGGACAAGCAGGTTTGGTCCATAATATTTACCCATTCTATGCTCAATATGCACAGAGCAGCCAAGGTCATGGATTTGGAGTTCAATATCCTCAAATGGTACAGTTCCCATTTCTGCCTCAGCACTATGGCTCTACAGGGGtcttgtcattttcttcttcaatgtcAATACCAACTACCAGTGCAGTTACAACCCCAGCAAccacaacaacaacagcagcagcaacaggGGCAGGTGCTTCACAAGCCTCTGAACAAAACTCTTCAACTTA 830 0.4108 MMSQQRQFQMVGGNNPGKYNDTTFTKIFVGGLAWETQGDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNRPPTSLHGVGRFRPAPGLMATPAYHGSSSTYFPQPTGQYTFPYSAYGYSGYSQETMYPMNCYSVYGGQQFSPYYPSTGASGQAGLVHNIYPFYAQYAQSSQGHGFGVQYPQMVQFPFLPQHYGSTGVLSFSSSMSIPTTSAVTTPATTTTTAAATGAGASQASEQNSST 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01984 276 SMART rrm1_1 26 98 IPR000504 GO:0003723
Bva08g01984 276 Gene3D - 1 113 IPR012677 -
Bva08g01984 276 SUPERFAMILY RNA-binding domain, RBD 14 121 IPR035979 GO:0003676
Bva08g01984 276 CDD RRM_RBM24_RBM38_like 25 100 - -
Bva08g01984 276 PANTHER BOULE-RELATED 2 261 IPR037366 GO:0003729
Bva08g01984 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Bva08g01984 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Bva08g01984 276 PANTHER - 2 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01984 Bva-Chr8 13316999 13319792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01984 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 9.93e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01984 - - qsu:111994039 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01984 08 13316999 13319792 Bva08g01984 08 13316999 13319792 ECH
Bva02g02108 02 21735526 21740661 Bva08g01984 08 13316999 13319792 ECH