Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01978 ATGTCAGACGGTGCTGAAATAGATGAGCGAGTGGATTTTGACGAGGAAAATTACATGGAAGAGATGGATGATGATGTTGAGGAACAAATAGATGAGGATGGAACAGACCGAGGTGGTGATGAGAACATTGAAGGGAATGTTGAAGAACATGAGGACTCAGCAGGAGAGGCCAGCACAAAAGACCAATTACATGATGAGTCAACTGCAGAGGCTGCTGAATCTATAGAAGATGAGCCAAACCAATCTTCTATTGATGAAGATGAGAAAGAGAAGCATGGTAAACTTCTTGCCCTTCCTCCTCATGGTTCCGAAGTTTTCATTGGTGGACTTCCTCGTGATGTgattgaaaatgaattaagGGAATTGTGTGATTCGATGGGTGATATTCTTGAGGTGAGATTGATGAAAGATAGGGACACAGGAGAAGGTAAAAGCTATGCTTTTGTGggatttaaaacaaaagaggCTGCACAAAAGGCCATAGAAGAGTTGCATAACAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCATTGTCTGAAACTAAACATAGATTATTTATTGGTAATGTTCCAAAAAACTTGACTGAGGATGAGTTTAGGAAAGCCATTGAGGGTGTTGGCCCTGGAGTTGAAAACATTGAGCTAATAAAGGATCCTCAACATCCAAGCAGGAATCGTGggtttgcttttgttttgtattataaCAGTGCATGTGCTGATTATTCACGACAAAAAATGTCGAGTGCAAATTTTAAGCTAGATGGTAATACACCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGATCACTCTGCTTCCTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACGACTCAAGGAACTATTTTGTCGACATGGGGAAGTAACAAAAGTGGTTATGCCACCTGGCAAAGCTGGAGGCAAACGTGATTTTGGTTTCATCCATTATGCAGAGAGGTCAAGTGCATTGAAGGCTATAAAAGAtacagaaaaatatgaaatagatgGGCAATTGTTGGAAGTTGTTCTTGCAAAGCCTCAGACCGAGAAAAAGTCTGATGGGGGTTATGGCTACAATCCTGGGCTTCATCCAAACCATCCTCCACATCCTGGGTACGGTGGCTTTTCAGGAAACCCATATGGCTCTATGGGGACTGGATATGGTGTGACTGCTGGTTTTCAACAGCCAATGATATATGGTAGAGGTCCAATGCCAGCGGGAATGCAAATGGTCCCAATGGTTTTACCCGATGGTCGAATTGGATATGTCCTTCAGCAGCCTGGCGTACAGATGGAAGCTCCTCGGCCTCGTCGGAGCAATGGTCCAGGTGGTCAGACCGGACGAGGAGGTAGTGGCAATGGTACTGAGGAAGGTAATCGTGGTAGAAGGTATCGACCCTATTA 1430 0.4154 MSDGAEIDERVDFDEENYMEEMDDDVEEQIDEDGTDRGGDENIEGNVEEHEDSAGEASTKDQLHDESTAEAAESIEDEPNQSSIDEDEKEKHGKLLALPPHGSEVFIGGLPRDVIENELRELCDSMGDILEVRLMKDRDTGEGKSYAFVGFKTKEAAQKAIEELHNKEFKGKTLRCSLSETKHRLFIGNVPKNLTEDEFRKAIEGVGPGVENIELIKDPQHPSRNRGFAFVLYYNSACADYSRQKMSSANFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENTTTERLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAIKDTEKYEIDGQLLEVVLAKPQTEKKSDGGYGYNPGLHPNHPPHPGYGGFSGNPYGSMGTGYGVTAGFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMEAPRPRRSNGPGGQTGRGGSGNGTEEGNRGRRYRPY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01978 476 SUPERFAMILY RNA-binding domain, RBD 100 267 IPR035979 GO:0003676
Bva08g01978 476 Gene3D - 266 397 IPR012677 -
Bva08g01978 476 Gene3D - 12 183 IPR012677 -
Bva08g01978 476 MobiDBLite consensus disorder prediction 436 476 - -
Bva08g01978 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Bva08g01978 476 MobiDBLite consensus disorder prediction 39 70 - -
Bva08g01978 476 MobiDBLite consensus disorder prediction 1 97 - -
Bva08g01978 476 PANTHER GEO13361P1-RELATED 2 474 - -
Bva08g01978 476 CDD RRM_SF 105 177 - -
Bva08g01978 476 SUPERFAMILY RNA-binding domain, RBD 270 383 IPR035979 GO:0003676
Bva08g01978 476 SMART rrm2_1 104 177 IPR003954 GO:0003676
Bva08g01978 476 Gene3D - 184 264 IPR012677 -
Bva08g01978 476 CDD RRM3_hnRNPR_like 277 355 - -
Bva08g01978 476 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 474 - -
Bva08g01978 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Bva08g01978 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 348 IPR000504 GO:0003723
Bva08g01978 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 251 IPR000504 GO:0003723
Bva08g01978 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 355 IPR000504 GO:0003723
Bva08g01978 476 SMART rrm1_1 184 261 IPR000504 GO:0003723
Bva08g01978 476 SMART rrm1_1 279 351 IPR000504 GO:0003723
Bva08g01978 476 SMART rrm1_1 104 177 IPR000504 GO:0003723
Bva08g01978 476 MobiDBLite consensus disorder prediction 8 38 - -
Bva08g01978 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01978 Bva-Chr8 13259927 13264329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01978 105 431 Eukaryotic Initiation Factors Gene Family AT1G71770 27.154 2.83e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01978 K13161 - gmx:100790907 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01978 08 13259927 13264329 Bva08g01978 08 13259927 13264329 ECH