Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01970 ATGGAGGACTTAATGATCTCGCCTACAACAACTCCTGTTGAGCAAAAGCTTCAGTTTTTACTCCAAAGCCAACATGATTGGTGGGTTTATGCCATTTTCTGGCACACCTCAAACGACGACAATGGCAACCTCTTCCTCTCTTGGGGCGATGGCCATTTCCATGGCAGCAAAGACACTTCCCCAAGAATCACCACCGCTGCCCACGACCACAATTACCCCATAAGGAAAATTATGAAGGGAATCCAATCACTCGTCAGTGACAACCCAAATGACAAAGACAACAACAACATGGAGCAAATCACCACAAACGGTGACCTCAATGATGCTGAGTGGTTTTACGTCATGTCGTTAACCCGCACCCACCCCATTGCTGATCATCATCgtggttcttcttcttctctccttGGAAAGGCCTTCACTTCCGGTTCTTCAATTTGGCtgaatagaagaaagaatgagcaCCAGTTTTACAACTGCGAAAGAGCCAAAGAGGCTTTCGTGCATGGGATTGAAACACTCGTTTGCATCCCAACCTCTTATGGAGTTATTGAGATGGGTTCCTATGATACCATCACAGAAAACTGGGGTCTACTTCAAAAAGCCAAGTCTCTATTCTCCTCGGCAGATCTTCTTGCTCTATCTCACCCTAAGCAACCAAACCCAATACAGTTATTTGATGATCACAACATCTCCTTCGCCGACATCGGCATTATCGCCGGGGTCCAAGAAGAGGATAATTCCACGCCTGCGCAACgccataaaagaaagagatcagAAAGTACTAAAGACAATAATGACATCTCCGGGGTCAAATTTGGATCCTCTTACGTAGATTCAGAGCACTCTGATTCAGATTTCCCAATGGGTACCCCTTCAAATATTGCCCAACTAGAGAAAAGGCCAACCaagaagagaggaagaaaaccCGAGCTCGGCCGTGAAACCCCGTCGAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTGAACCACCGCTTTTACGCATTGAGAGCGGCGGTGCCAAACGTGTCGAGAATGGACAAAGCTTCTTTGTTGTCGGATGCTGTTTCTTATATAAACGAGTTGAAAGCAAAGATTGAAGATTTAGAGTCAAAGGTGGAGAGGGAGAGTAGTAAGAAGGTGAAGCTGGAAATGGCAGATGCTGTAGATAACCAGAGCACCACAACCTCTACAGTGGACCAAACAAGGCCTAATGGTAATGGGTCTTCTTCTCTGGAGGTCGAGGTTAAGATTATAGGAGCAGATGCTATGGTGAGGGTTCAATCGGAGAACACGAGCCACCCAGGAGCCAGGCTAATGGGTGCATTGAGAGACCTGGAGCTTCGGGTTCACCATGCCAGCATGTCCTGCGTGGATGATCTAATGCTTCAAGATGTTGTGGTGAAGATTCCTCAAAGGTTAAGAAGTGAAGAAAGTCTAAAATCTGCAATTCTCGCAAGACTTGATCAGTA 1475 0.4468 MEDLMISPTTTPVEQKLQFLLQSQHDWWVYAIFWHTSNDDNGNLFLSWGDGHFHGSKDTSPRITTAAHDHNYPIRKIMKGIQSLVSDNPNDKDNNNMEQITTNGDLNDAEWFYVMSLTRTHPIADHHRGSSSSLLGKAFTSGSSIWLNRRKNEHQFYNCERAKEAFVHGIETLVCIPTSYGVIEMGSYDTITENWGLLQKAKSLFSSADLLALSHPKQPNPIQLFDDHNISFADIGIIAGVQEEDNSTPAQRHKRKRSESTKDNNDISGVKFGSSYVDSEHSDSDFPMGTPSNIAQLEKRPTKKRGRKPELGRETPSNHVEAERQRREKLNHRFYALRAAVPNVSRMDKASLLSDAVSYINELKAKIEDLESKVERESSKKVKLEMADAVDNQSTTTSTVDQTRPNGNGSSSLEVEVKIIGADAMVRVQSENTSHPGARLMGALRDLELRVHHASMSCVDDLMLQDVVVKIPQRLRSEESLKSAILARLDQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01970 491 Coils Coil 353 387 - -
Bva08g01970 491 MobiDBLite consensus disorder prediction 247 264 - -
Bva08g01970 491 PANTHER TRANSCRIPTION FACTOR BHLH14 10 489 - -
Bva08g01970 491 PANTHER MYC 10 489 IPR045084 GO:0003700|GO:0006355
Bva08g01970 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 377 IPR036638 GO:0046983
Bva08g01970 491 MobiDBLite consensus disorder prediction 298 327 - -
Bva08g01970 491 MobiDBLite consensus disorder prediction 388 411 - -
Bva08g01970 491 CDD bHLH_AtAIB_like 312 388 - -
Bva08g01970 491 Pfam Helix-loop-helix DNA-binding domain 318 363 IPR011598 GO:0046983
Bva08g01970 491 Gene3D - 308 379 IPR036638 GO:0046983
Bva08g01970 491 MobiDBLite consensus disorder prediction 265 297 - -
Bva08g01970 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 205 IPR025610 -
Bva08g01970 491 SMART finulus 320 369 IPR011598 GO:0046983
Bva08g01970 491 MobiDBLite consensus disorder prediction 241 327 - -
Bva08g01970 491 MobiDBLite consensus disorder prediction 389 411 - -
Bva08g01970 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01970 Bva-Chr8 13227498 13229264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01970 7 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 35.510 4.79e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01970 bHLH-MYC_N 3.8e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01970 - K13422 qsu:111993276 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01970 08 13227498 13229264 Bva08g01970 08 13227498 13229264 ECH