Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01965 ATGCACATCACATGGCACACacttccaaaaacaaaaaatctccTTGCCTCCTGTCTTGAAGGACTTTTAAGTCGCAGCATCCACCCTGAGTCCCAACGAGATGTTAGATCATATGGAATATTCTCGTTTcttcattctcattctcattctcattcgGCAGCTGCCGCAGAAGCAGAAACTTTTAGCAGCACTAGCTCACCAGCAGCcatgagaaagaagaagagcaaGAACAAGAGAAGATTCAGCCATGAGCAAATCAAATCATTGGAAACCATGTTTGAGTCTGAGACTAGGcttgaaccaagaaagaagtTGCAGTTGGCAAGAGAGCTTGGTTTGCAGCCAAGACAAGTTGCTATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTCAAAGCAACTTGAGCGGGACTATAGCATACTCTTAACCAATTACAATAGCTTGGCTTCACGGTTTGATGCTCTCAAGAAGGAGAAGCAGGCATTGCTATTACAGTTGCAGAAGCTGAAAGATCTGACACAAAAGCCACAAGAGCAAATTCAGCCTAGTGCACAAGTTAAAGCTGCAACCAGCATGGATAGTGAATCAGAAAATGGATACAACATCAAATGTCAACCCGAGCTGAATCCAAGCCCATCAACGGAAAGATCAGAACACGTACTTGGCGTTCTCTCGGATGATGATAGCAGCATAAAGGCAGAGTATTTTGGCCTTGAAGAAGAACCTAGCCTTCTGAATCTTGTTAAGCATGCTGATGGTTCCTTGACATCACCAGAAGATTGGGGCACGCTTGATTCCAATGATCTCTTAGGCCAATCTACTAGTGACTACCAATGGTGGGATTTCTGGTCATG 854 0.4016 MHITWHTLPKTKNLLASCLEGLLSRSIHPESQRDVRSYGIFSFLHSHSHSHSAAAAEAETFSSTSSPAAMRKKKSKNKRRFSHEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILLTNYNSLASRFDALKKEKQALLLQLQKLKDLTQKPQEQIQPSAQVKAATSMDSESENGYNIKCQPELNPSPSTERSEHVLGVLSDDDSSIKAEYFGLEEEPSLLNLVKHADGSLTSPEDWGTLDSNDLLGQSTSDYQWWDFWS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01965 284 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Bva08g01965 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 284 IPR045224 GO:0003700
Bva08g01965 284 MobiDBLite consensus disorder prediction 55 81 - -
Bva08g01965 284 Coils Coil 152 175 - -
Bva08g01965 284 CDD homeodomain 81 133 IPR001356 GO:0003677
Bva08g01965 284 Gene3D - 59 134 - -
Bva08g01965 284 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Bva08g01965 284 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Bva08g01965 284 Pfam Homeobox associated leucine zipper 132 173 IPR003106 GO:0006355|GO:0043565
Bva08g01965 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 55 284 - -
Bva08g01965 284 SUPERFAMILY Homeodomain-like 58 134 IPR009057 -
Bva08g01965 284 SMART HOX_1 74 136 IPR001356 GO:0003677
Bva08g01965 284 MobiDBLite consensus disorder prediction 195 218 - -
Bva08g01965 284 MobiDBLite consensus disorder prediction 55 70 - -
Bva08g01965 284 Pfam Homeodomain 76 130 IPR001356 GO:0003677
Bva08g01965 284 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01965 Bva-Chr8 13187271 13188684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01965 51 284 Homeobox Transcription Factor Family AT2G46680 52.569 1.19e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva08g01965 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01965 K09338 - gmx:100797862 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01965 08 13187271 13188684 Bva12g01901 12 15245896 15247294 ECH
Bva08g01965 08 13187271 13188684 Bva06g03020 06 18758474 18759707 ECH
Bva08g01965 08 13187271 13188684 Bva08g01965 08 13187271 13188684 ECH
Bva02g02090 02 21602977 21604381 Bva08g01965 08 13187271 13188684 ECH