Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01959 ATGATTCTTTACAACccaatttttcttatcattttaataatatttgtgttCTTTCTGATTCGGGTCATTGCGTACAAAACTGGATTGATATATTTGGTGAAGAGATGGTGGAGAATATTTGAAGATTGTTTTCATGTTTACCAGTTTTACAGAGTCCCAGAACTCAACGAAAGCACGCAGGAGAATCAGCTGTATAGGAAGGTCTCTCTCTACTTGCATTCTCTGTCTTCCATTGAAGACTCTGACTTCACCAACCTCGTCGCCGGCAAGAAGCTGAACGACATCGTTCTCTGCCTCAACCCCAAACAAACCATCGAGGATGATTTTCTGGGAGCCAGAGTGTTCTGGCTCAACGAAGTGGATGAAAAATCAGAATCCAATCCCAATCGCAACAGAACTCTGATACTCAAAATCAGAAAAGCCGATAAGCGGCGAATTCTCCGTCCATATCTCCAGCACATCCACACCGTCGCCGATGAAATTGAGCAACGCGGAAAACGTGATTTGAAGCTTTTCACGAACGTCGACCCCAACGGACGGTGGAGACCCGTTCCGTTCACTCATCCATCAACCTTCGATACAATCGCCATGGAAGACGATCTCAAGAACAAGATCAAATCCGATCTCGAATCGTTTCTCAGAGCCAAACAGTACTATCACCGTTTGGGGCGGGTATGGAAACGGAGCTTCCTCTTGTACGGTCCGTCCGGCACCGGAAAATCGAGCTTCATCGCCGCCATGGCTAATTTCCTCAGCTATGACGTGTACGACATCGATCTCTCGAAGGTTCCTAGCGATTCAGATCTGAAATTTTTGTTGCCACAGACAACACCGAAATCAATCATCGTGATAGAGGACCTCGATCGTTTCCTGGTAGAGAGACTAACGGCCGTGAGCCTATCGGGCGTGTTGAACTTCATGGACGGCATTTTAAACTCGTGCTGCGCCGAGGAGAGGGTCATGGTGTTCACGATGAATAATAAGGACAATGTCAACCCGAGCGTGCTCCGTCCGGGTCGGATCGattttcatatccattttcCGCTCTGCGATTTCTCGGCGTTTAAAGCGCTGGCGAATAGTTATTTGGGGGTGAAGGAGCACAAGCTTTTCCCTCAGGTTCAGGAAATTTTTCATAACGGCGCGAGTTTGAGCCCGGCTGAAATCTGCGAGTTGATGATCGCTAATCGAAACTCACCGAGCCGAGCCATCAAGTCAGTGATCAGCGCTCTGCAAACGGACGGCGAGGGGAGAGGGAACGGAAAGATCGGACGGCAGTTCGGGAGTAATGCGGAGGACTTGGATGAATTGGAACCGCATGGAGGATTGTGCAGTGAAGGTTTCCAAACTGGGAAGGATTTTCGGAAATTGTACGGTTTCTTAAGattgaaaaacaacaaaaaatctGGTTCGTTGGATGCTGCAGCTGTACAATG 1436 0.4645 MILYNPIFLIILIIFVFFLIRVIAYKTGLIYLVKRWWRIFEDCFHVYQFYRVPELNESTQENQLYRKVSLYLHSLSSIEDSDFTNLVAGKKLNDIVLCLNPKQTIEDDFLGARVFWLNEVDEKSESNPNRNRTLILKIRKADKRRILRPYLQHIHTVADEIEQRGKRDLKLFTNVDPNGRWRPVPFTHPSTFDTIAMEDDLKNKIKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFIAAMANFLSYDVYDIDLSKVPSDSDLKFLLPQTTPKSIIVIEDLDRFLVERLTAVSLSGVLNFMDGILNSCCAEERVMVFTMNNKDNVNPSVLRPGRIDFHIHFPLCDFSAFKALANSYLGVKEHKLFPQVQEIFHNGASLSPAEICELMIANRNSPSRAIKSVISALQTDGEGRGNGKIGRQFGSNAEDLDELEPHGGLCSEGFQTGKDFRKLYGFLRLKNNKKSGSLDAAAVQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01959 478 PANTHER BCS1 AAA-TYPE ATPASE 8 435 - -
Bva08g01959 478 Pfam Domain associated at C-terminal with AAA 31 116 IPR025753 -
Bva08g01959 478 SMART AAA_5 226 351 IPR003593 -
Bva08g01959 478 CDD AAA 227 349 - -
Bva08g01959 478 Gene3D - 184 349 IPR027417 -
Bva08g01959 478 PANTHER BNAC04G00800D PROTEIN 8 435 - -
Bva08g01959 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 411 IPR027417 -
Bva08g01959 478 Pfam ATPase family associated with various cellular activities (AAA) 231 349 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01959 Bva-Chr8 13126150 13128059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01959 222 347 Calmodulin-binding Proteins AT3G56690 29.078 1.77e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01959 - K08900 fve:101302781 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01959 08 13126150 13128059 Bva08g01959 08 13126150 13128059 ECH
Bva02g02084 02 21552139 21554010 Bva08g01959 08 13126150 13128059 ECH