Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01957 ATGATGGTAGCAGAAATACTTGCCAGTGGCGTTAGCGGTGCTACTGCAGAAACTGTAACTCAGACTATAGAAATTATTGGCGAGTTTGTAAACAGTGCTGCCGATGTTCTTATAAAGAAGGATAGTTTTGAGGAACTTGCAACTTACCTGGAGAAAATTGTACCCATCTTGAAGGAATTGAGGGACATAACTGTGAGTAACTCTCAGACCTTTTGGCATGCAGTTGAGATTTTGAATCGTGAAATCAGAGAAGCTAACCAACTTAGATTAGAATGCAGCAAGAGAAACAAGGTATATCTCCTAGTGAGTTGTAGGTCAATTGTTAAGCGTTTAAAGAATGCCACAACTGAGATCAGCCGGGCACTTGGTTTTCTTCCTTTGGCCACATCATGTCTTTCCTCTGGAATAACTgaacaaattgaaaatctGTGTGACAGTATGCAGAAAGCTGAGTTTAAGGCAGCcataagagaagaagagataCTGGAGAAAATCGAGTCAGGGATACGGGAAGAGAATGCGGATCGCTCCTATGCCAATAATTTGATGAATCTCATTGCAGAGGCTGTAGGGATTACGAAAGAGAATTCAGCAATGAAGAGACAACTTGAAGAATTCAAAAGTGAGATTGAAGAAGCCCGCCTTAGGAAGAACCAGGCTGAAGCTATACAAATGGATCAAATAATTGCTTTGTTAGAAAGGGCTGATGCAGCCTCATCACCTAGAGAAAAAGAACTCAAGTACTTTGCCAAACGCAAATCTTTGGGTAGTCAACTCCTGGAGCCACTTCAGTCATTCTATTGCCCCATAACCAAGGATGTCATGGTAGAACCTGTAGAAACTTCATCAGGGCAGACATTTGAGAGAAGTGCTATAGAAAAGTGGTTTACAGAAGGTAACAAAATGTGTCCTCTAACCATGATTCCTTTAGACGCTTCGTTTTTGCGACCAAACAAAACCTTGAAACAGTCCATAGAAGAATGGAAGGATAGAAATACCATGATTACAATTGCTTCAGTAAGAGAACAAATCCAGTCTGGAGATGACGATGAAATACTATGTTGTCTAGCAACTATACAGGATTTGTGTGAACAAAAGGACCAGCACAGGGAATGGGTGATATTGGAGGATTACATTCCGGTTCTTATCCAAATTCTTGGTGCCAAGAACCGTGAGACGAGGAAAAATGCTCTTGTCATCCTTTGCATGTTGGCAACGTATAGTGATGATGCTAAGGAAAGAATTGCAAAAGTTGATAATGCAATTGAATCTATTGTCCGTTCTCTTGGGCGTCGTGTATCGGAAAGGAAGTTAGCAGTGTCATTACTGCTGGAGTTATCCAAATATGATTTGGTACGAGAATACATTGGAAACGTTCAAGGTTGCATTTTACTGTTGGTGACCATGTCTAGCAGTGATGACAATCAAGCTGCCAGAGATGCCACAGAGTTATTGGATAATCTTTCATACTCTGATCAGAATGTTCTAAGGATGGCAAAGGCAAACTATTTCAAGCACTTGTTGCAGCGTCTTTCAACAGGACCAGATGATGTGAAAATGACTATGGCAACAACTCTAGCAGAAATGGAGTTAACCGACCACAATAAAGAGTCCTTGTTCGAAGGTGGTGTTCTGGGTCCTCTTCTTCAATTAGTCTCACATGTGGATGTTCAGGTGAAAATAATTGCTGCAAGAGCTCTTCAGAACCTATCcagtttaaagaaaaatgcaatagAGATGATTCAACAAGCTGCAGAGCGCCCTTTACTTGACCTTCTTTTCCATAATGGCTTACCATCCTCAAGTCTACGAGAACATGTGGCGGCCATAATTATGCAACTTGCTGTATCAACCATATCTCAAGACGGAGAGAAACcagtttttttattagaatctGATGAAGATGTTTTTAAGCTCTTCTCTTTGGTTAGCATTTCAGGGCCTGATCTGGAGCGATATATTCTCCAGACCTTTTATGCCCTGTGTCAGTCCCCTTCATCTTCATATATCAGGGCAAAGCTAATAGAGTGTTCGGCTGTTCAAGTATTGGTCCCGTTGTGTGAGCATGAGAACCTAAATCTACGAGCAAGTGCAGTGAAGCTCTTTTCTTGCTTGGTAAATAGCACTGATGAAGCGTCCATCCTGGAAAATGTGAATCAGAAATGCATTGTGACATTACTCAGGATCCTGAGATCTTCTTTGGATGAAGAGGAAATTGCTTCTGGTATGGGCATAATATGCTATCTTCCAGAAACTGCCCAGATCACTCAATGGTTTCTGGATGCTGGTGCGCTGCCAATCATTTATAAGCATATCCAAGAGGGGAAGGAAAGAGATCTCCAAAAGTTAGTAGAGAATGCTGTTGGTGCTTTATGTCGTTTCACTGTTGCAGAGAACTTGGAATGGCAAAAGAGTGCTGCCGAGACTGGGATTATACCACTTCTAGTACAGTTGCTAGAATGTGGAACAACCTTGACAAAACGACGTGCGGCGTGGTCTCTAGCTCAAATTTCAAAGAACTCAGCTAGGCTGAGCAGGCCAATACCAAAACGCAAAGGACTTTGGTGCTTCTCAGCTCAGGGAGAAGTTGGCTGCTTGGTTCATGGAGGATTCTGTACTTCATCATTTTGCCTTTTGGAGGCTGATGCAGTGGGACCACTAGCAAAGACTCTCGGGGAATCTGACCCTGCAGCTTGTGAGGCTTCTTTAGATGCACTATTGACTTTAATTGAAGGTGAAACCGAAGGACTACAGAGCGGTAGTAAGGTGCTTGAAGAAGCAAATGCCATACCACTAATGATAAGATGTCTTGGTTCTCCGTCCATTGCATTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTCAGGCTTTCGGAGTTCAGACAGAGGTATGGAGCATCAGCTCAGATGGCTATTGTTGATTTAACTCAGCGTGGTAATGGCAGTATGAGATCTTTGGCTGCTAGGATATTGGCACACTTGAATGTGCTTCATGACCAGTCTTCTTATTTCTA 3017 0.415 MMVAEILASGVSGATAETVTQTIEIIGEFVNSAADVLIKKDSFEELATYLEKIVPILKELRDITVSNSQTFWHAVEILNREIREANQLRLECSKRNKVYLLVSCRSIVKRLKNATTEISRALGFLPLATSCLSSGITEQIENLCDSMQKAEFKAAIREEEILEKIESGIREENADRSYANNLMNLIAEAVGITKENSAMKRQLEEFKSEIEEARLRKNQAEAIQMDQIIALLERADAASSPREKELKYFAKRKSLGSQLLEPLQSFYCPITKDVMVEPVETSSGQTFERSAIEKWFTEGNKMCPLTMIPLDASFLRPNKTLKQSIEEWKDRNTMITIASVREQIQSGDDDEILCCLATIQDLCEQKDQHREWVILEDYIPVLIQILGAKNRETRKNALVILCMLATYSDDAKERIAKVDNAIESIVRSLGRRVSERKLAVSLLLELSKYDLVREYIGNVQGCILLLVTMSSSDDNQAARDATELLDNLSYSDQNVLRMAKANYFKHLLQRLSTGPDDVKMTMATTLAEMELTDHNKESLFEGGVLGPLLQLVSHVDVQVKIIAARALQNLSSLKKNAIEMIQQAAERPLLDLLFHNGLPSSSLREHVAAIIMQLAVSTISQDGEKPVFLLESDEDVFKLFSLVSISGPDLERYILQTFYALCQSPSSSYIRAKLIECSAVQVLVPLCEHENLNLRASAVKLFSCLVNSTDEASILENVNQKCIVTLLRILRSSLDEEEIASGMGIICYLPETAQITQWFLDAGALPIIYKHIQEGKERDLQKLVENAVGALCRFTVAENLEWQKSAAETGIIPLLVQLLECGTTLTKRRAAWSLAQISKNSARLSRPIPKRKGLWCFSAQGEVGCLVHGGFCTSSFCLLEADAVGPLAKTLGESDPAACEASLDALLTLIEGETEGLQSGSKVLEEANAIPLMIRCLGSPSIALQEKSLHALERIFRLSEFRQRYGASAQMAIVDLTQRGNGSMRSLAARILAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01957 1005 Gene3D - 628 859 IPR011989 -
Bva08g01957 1005 SUPERFAMILY ARM repeat 337 995 IPR016024 -
Bva08g01957 1005 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Bva08g01957 1005 SUPERFAMILY RING/U-box 253 334 - -
Bva08g01957 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Bva08g01957 1005 Gene3D - 873 1003 IPR011989 -
Bva08g01957 1005 CDD RING-Ubox_PUB 266 307 IPR045210 -
Bva08g01957 1005 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Bva08g01957 1005 Coils Coil 189 223 - -
Bva08g01957 1005 Coils Coil 563 587 - -
Bva08g01957 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 339 IPR013083 -
Bva08g01957 1005 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Bva08g01957 1005 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Bva08g01957 1005 Coils Coil 75 95 - -
Bva08g01957 1005 Gene3D - 340 627 IPR011989 -
Bva08g01957 1005 Gene3D - 13 130 IPR036537 GO:0007166
Bva08g01957 1005 SMART arm_5 573 616 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 667 707 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 366 406 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 532 572 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 408 448 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 449 490 IPR000225 GO:0005515
Bva08g01957 1005 SMART arm_5 799 839 IPR000225 GO:0005515
Bva08g01957 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1005 - -
Bva08g01957 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1005 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01957 Bva-Chr8 13111610 13117106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01957 264 1005 U-box Gene Family AT1G76390 29.299 1.58e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01957 - - gmx:100799969 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01957 08 13111610 13117106 Bva08g01957 08 13111610 13117106 ECH
Bva02g02081 02 21538202 21544075 Bva08g01957 08 13111610 13117106 ECH