Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01956 ATGAGGCCGGTCTTTGTTGGGAACTTTGAGTATGATACCCATCAATCAGAGCTTGAACGCTTGTTCGGGAAGTATGGGAGGATTGAACGTGTGAATATGAAATCTGGTTTTGCTTTTGTCTACTATGAGGATGAGCGTGATGCTGAAGAAGCAATACGTGCGCTTGACAATTTTCCATTTGGTTATAACAAGCGAAGGCTGTCTGTGGAGTGGGCTAAATTTGAACGGGTTAGGCACCGTGATGGATCAAGAGCGAATCAGAGGCCAACAAAAACACTATTTGTCATCAACTTCGACCCAGTTCGCACAAGAGTTCATGATATAGAAAGACACTTTGAACCTTATGGGAAGGTTCTTCACGTGCGCATCCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAGAGCTCTTGAGTGTACACATATGAGCAAGATACGGGACAGGGTGGTGTCCGTGGAGTATGCTCTGAGGGATGATGGGGAGAGGGGTGACAGATATGATAGTCCTAGAAGGGGGGGCTATGGTAGATCACCTAGCCCTGTTTATCGCAGACGACCGAGTCCTGACTATGGTAGTCCTCTGTACGATCGGTATAACGGACCGGTATACGACAAACGTCGGAACCCCGAGTCTGATAGGCCAAGGAGTCCTGCTTATGGCAAGCACAGAAGTCCCGAGTTTGGACGATATCGGAGCCGTTCACCTATCCGAAGGTCAAGAACTTG 737 0.4776 MCISPHISAGFAFVYYEDERDAEEAIRALDNFPFGYNKRRLSVEWAKFERVRHRDGSRANQRPTKTLFVINFDPVRTRVHDIERHFEPYGKVLHVRIRNFAFVQFETQEDATRALECTHMSKIRDRVVSVEYALRDDGERGDRYDSPRRGGYGRSPSPVYRRRPSPDYGSPLYDRYNGPVYDKRRNPESDRPRSPAYGKHRSPEFGRYRSRSPIRRSRT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01956 219 MobiDBLite consensus disorder prediction 138 219 - -
Bva08g01956 219 Gene3D - 60 161 IPR012677 -
Bva08g01956 219 MobiDBLite consensus disorder prediction 178 211 - -
Bva08g01956 219 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 8 184 IPR029537 GO:0000398|GO:0005681
Bva08g01956 219 SMART rrm1_1 66 131 IPR000504 GO:0003723
Bva08g01956 219 Gene3D - 4 59 IPR012677 -
Bva08g01956 219 SUPERFAMILY RNA-binding domain, RBD 7 138 IPR035979 GO:0003676
Bva08g01956 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 135 IPR000504 GO:0003723
Bva08g01956 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 35 IPR000504 GO:0003723
Bva08g01956 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 128 IPR000504 GO:0003723
Bva08g01956 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 48 IPR000504 GO:0003723
Bva08g01956 219 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01956 Bva-Chr8 13106865 13109356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01956 8 126 Eukaryotic Initiation Factors Gene Family AT4G34110 30.709 7.93e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01956 K12893 - gmx:100797709 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01956 08 13106865 13109356 Bva08g01956 08 13106865 13109356 ECH