Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01947 ATGGGAAGAGCTCCCTGTTGTTCTAAAGTCGGGTTGCACCGAGGCCCGTGGACTCCCAGAGAAGATGCATTGCTCACCAAGTATATTCAAGCTCACGGCGAAGGCCAATGGAGATCCTTACCAAAAAGAGCAGGGCTCCTAAGATGTGGGAAGAGTTGCAGACTAAGATGGATGAACTATCTGAGACCGGACATAAAGAGAGGAAACATAACGGCCGAGGAGGATGACCTCATCATCCGGATGCATTCCCTTCTCGGAAACCGATGGTCCCTCATCGCCGGCCGGCTACCCGGCCGAACagataatgaaataaagaattacTGGAACACCCATCTCAGCAAAAAGTTAAGAAACCAAGGAACCGACCCGAACACGCACGGGAAATTAACAGATCCTTGGCGAGATAAAACGACAAAGAGGAAGACCGGCAACAACAAAAACGACGGTAGcagcaagaagaagaagaagaagaagcaggaCAAGAATGACAACGAGAGCCAAAACGCGGAAGCAGAAAAGACCGTAGTTTATCTCCCAAAACCCATTAGGGTGACGGCGTTTTCGTTGCCAAGAAGTAACAGTAATTTAACACTAGATTCCAATTCGGCGAGTGGATCGACTAGCCAAGAGAAAGATCAGGAAGAAGGTTCTGCGGGGAATATTAATGAGAAAGAGGTAAACAACGATATAGCGGCGTGGGGAGAATATGGTAATTCCGAAGGAGAAAATGACGGGTTTGGATTTTTACATGACGTACGTGACTTGGTCAATCCCTGCTCCGACATGGAATACCAATCGGATTTCCCCACGCTAGAGAAGCTTTACGAAGAGTACTTGCAGCTCTTGAATGCGGATGAAAACCAAGTGGAATTGCAGCCCTTTGCTGAATCTTTCTTcgtcta 902 0.4512 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITAEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPNTHGKLTDPWRDKTTKRKTGNNKNDGSSKKKKKKKQDKNDNESQNAEAEKTVVYLPKPIRVTAFSLPRSNSNLTLDSNSASGSTSQEKDQEEGSAGNINEKEVNNDIAAWGEYGNSEGENDGFGFLHDVRDLVNPCSDMEYQSDFPTLEKLYEEYLQLLNADENQVELQPFAESFFV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01947 300 Coils Coil 154 174 - -
Bva08g01947 300 Gene3D - 71 116 - -
Bva08g01947 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva08g01947 300 CDD SANT 16 61 IPR001005 -
Bva08g01947 300 MobiDBLite consensus disorder prediction 128 149 - -
Bva08g01947 300 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva08g01947 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva08g01947 300 Gene3D - 14 66 - -
Bva08g01947 300 MobiDBLite consensus disorder prediction 192 224 - -
Bva08g01947 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva08g01947 300 SMART sant 13 63 IPR001005 -
Bva08g01947 300 SMART sant 66 114 IPR001005 -
Bva08g01947 300 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 291 - -
Bva08g01947 300 MobiDBLite consensus disorder prediction 192 226 - -
Bva08g01947 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva08g01947 300 CDD SANT 71 112 IPR001005 -
Bva08g01947 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva08g01947 300 MobiDBLite consensus disorder prediction 115 174 - -
Bva08g01947 300 PANTHER MYB TRANSCRIPTION FACTOR 1 291 - -
Bva08g01947 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01947 Bva-Chr8 13067252 13068464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01947 4 129 MYB Transcription Factor Family AT3G13540 73.810 7.09e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g01947 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01947 K09422 - gmx:778044 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01947 08 13067252 13068464 Bva08g01947 08 13067252 13068464 ECH