Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01943 ATGTGTTCCCAAGAAACAGGGAAAGCCATGAGAACCCATCAGCCATGTGCAGCTTGTCGGATGCTCCGCCGGAGATGTGATAGTGGGTGTATGCTTGCACCATATTTCCCAGCTGATGATGTTGAGAACTTTGTTGGAGTGCATAGAGTCTTCGGGGCTAGCAATGTTATCAAAATGATTCAGATGGTGGAGGAGGCAAAGAGGGATGATGCCGTTAAAGCCATAGTTTATGAAGCGAAAGCAAGAATGAAAGACCCGGTATATGGTAGCGCCGGAGCTATCTTGCAGCTGCAAAAGATGGTTGAGGAACTGAATGTGCAGTTGGAATCAATAAGAGCTAGGGTTTCAGAGATGCAACAACAAAGAGATCAGTTATTGAGCAATATTCATATGCAGGCTCCTTATGATCTTGACCCAGTATACACCATTAATGAACCTGCACCTTTCTCTAGTGGTTATGGTTTATCGCCAGTGGTAGATGTAGATGTTGATGATGCCGTGGCAATGGCATATGCATATGACCCAGTCCAGTTTCCTGTAGAAGGTGACTACTGGGTTTTCTa 563 0.4512 MCSQETGKAMRTHQPCAACRMLRRRCDSGCMLAPYFPADDVENFVGVHRVFGASNVIKMIQMVEEAKRDDAVKAIVYEAKARMKDPVYGSAGAILQLQKMVEELNVQLESIRARVSEMQQQRDQLLSNIHMQAPYDLDPVYTINEPAPFSSGYGLSPVVDVDVDDAVAMAYAYDPVQFPVEGDYWVF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01943 187 Pfam Lateral organ boundaries (LOB) domain 15 111 IPR004883 -
Bva08g01943 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 149 - -
Bva08g01943 187 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Bva08g01943 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 6 149 - -
Bva08g01943 187 Coils Coil 94 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01943 Bva-Chr8 13044755 13045897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01943 15 130 AS2 family AT2G28500 56.034 8.04e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva08g01943 LOB 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01943 - - qsu:112035510 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01943 08 13044755 13045897 Bva08g01943 08 13044755 13045897 ECH