Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01938 ATGGCACACCTGGGTTGTAATCTGAGGGGCCCGGCGAGTTCCTTTGCTGAAACAGTTCCTGAAGATGATCTCTACAAAGAGCTATGGAAGCTCTGTGCAGGGCCTTTGGTGGATGTACCTCGTGCGGGAGAGAGAGCTTTCTACTTCCCTCAGGGTCACATGGAacaaTTGCAAGCATCTACGAATCAGGATTTGAGCTTGAACCAGCAAATGCCCCATTATAATCTTCCTCCGAAGATTCTCTGCCGTGTCGTTAACACTACACTGTTGGCGGAACAAGATACCGATGAAGTTTATGCCCGGATAACTTTGCTGCCGGAAGCAGATCAAACAATGCCTGCACATCCTGATCCATGTCCACCTGAGACCCAAAAACAAGCAATTTACTCATTTTGCAAGATATTGACTGCCTCGGATACCAGCACACATGGGGGATTTTCAGTTCTGCGGAAGCATGCTACTGAATGCCTGCCTCAATTGGACATGAACCAAGCAACCCCGACTCAGGAATTGACAGCAAAGGATCTTCACGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCGAAGAGGCACTTGCTCACTACCGGCTGGAGCACATTTGTCACTTCAAAAAGATTAGTTGCTGGAGAcgcttttgtgtttttaagGGGTGAGAATGGGGACCTGAGAGTTGGTGTCCGGCGTCTTGCTCGGCAGCAGATCCCGATGCCTTCATCTGTAATATCTAGCGAAAGCATGCATCTTGGAGTGCTTGCTACTGCCAAGCATGCTCTTAAGACTAATACTATGTTTGTGGTTATATATAAACCAAGGACTAGCCAGTTCCTCATTGGCGTGAACAAATATCTTGAGGCTATGAACAACAAGTTTTCTGTTGGTATGCGTTTCAAGATGAGATTCGAGGGGGAGGATTCACCTGAGAGAAGGTTTTCGGGTACTATTGTTGGGGGTGGAGATATATCTCCAGAGTGGCCAGACTCTGAATGGCGGTCACTGCAGGTTCAATGGGATGAGCCAGCAACAATTCAAAGGCCAGAGAGGGTTTCTCCTTGGGAGATAGAGCCTTTCGTAACTTCTGCAGCTTTAAATGTCACTCAGCCACCAGTGAAGAGCAAAAGGTCCCGTCCTACCGAAGTTCCATCTTCCGAGATTACGTCAAACTCAACTGCTTCAGTTTTTTGGTATCATGGATCATCATCCCACTCTCAGGAGCTTAAAAGTGTTGCAGAAGTACAAAGCAAAGAAAACCAGGTTATATGGCCTATGAtgcagaaagaaattaattgcaagCCAATGAATGGTAAAAACAGTGCGAGCTGCTCTAGAGTCCGGGTGGAAGGAATGTGGTCATCTTCATCACATTTGCATGCCTCTTCGAACTTTTTCCCCAGTAACAATAATGCTGTCATGGGACGATCTTCTATCACTGGTTATGCTCCTGTTTCATCTAGGCCAAGTGATAGCCTTGTGCATGAGCAGGtggaaaatgggaaaaagtCTGAGAATTCCCCAGGTATTATGTTATTTGGAGTTGATCTGAAAAACAATAACACCATTTCTCCTCGGGATAAAGAAATGGGACGTCCAACTATGGTTCCAAGTGGTCCCAAAGAATCCATTATTGTTGCTGCATGTGAAACTGAGAGGGGTCAGAATCGCAATTATCCAATGTCCAAAACTGAGCCGAAGAAAGTTACATCTGATGCAACACCATATGCGAAGCAGAGTAAGCAGGTTTCTGCACCATCCACAAGGACTCGCACTAAGGTGCAAATGCAAGGTGTTGCGGTGGGCCGAGCTCTTGACTTGACCACGATGAAGGGATACGCTGAACTCATCGATGAGCTCGAAAACTTGTTTGATCTTAAAGGAGAGCTTCGTTCAAGATACAAATGGTCTGTCACTTTCACTGACGATGAGAATGAATTGATGCTCGTGGGCGATGACTCGTGGCCGGTTTTCTGTAATGTGGTGAAGAGGCTTTACATCATAACCACTGAAgagctgaagaagaaaaatgcaaagCTTAAGCTTCCGGCGTCGTCATCCGATGTTGAAGAGACTCTGATGAGTGTGGATTCACAGATCAGGACTGCAGATTG 2111 0.4462 MAHLGCNLRGPASSFAETVPEDDLYKELWKLCAGPLVDVPRAGERAFYFPQGHMEQLQASTNQDLSLNQQMPHYNLPPKILCRVVNTTLLAEQDTDEVYARITLLPEADQTMPAHPDPCPPETQKQAIYSFCKILTASDTSTHGGFSVLRKHATECLPQLDMNQATPTQELTAKDLHGFEWKFKHIFRGQPKRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGDLRVGVRRLARQQIPMPSSVISSESMHLGVLATAKHALKTNTMFVVIYKPRTSQFLIGVNKYLEAMNNKFSVGMRFKMRFEGEDSPERRFSGTIVGGGDISPEWPDSEWRSLQVQWDEPATIQRPERVSPWEIEPFVTSAALNVTQPPVKSKRSRPTEVPSSEITSNSTASVFWYHGSSSHSQELKSVAEVQSKENQVIWPMMQKEINCKPMNGKNSASCSRVRVEGMWSSSSHLHASSNFFPSNNNAVMGRSSITGYAPVSSRPSDSLVHEQVENGKKSENSPGIMLFGVDLKNNNTISPRDKEMGRPTMVPSGPKESIIVAACETERGQNRNYPMSKTEPKKVTSDATPYAKQSKQVSAPSTRTRTKVQMQGVAVGRALDLTTMKGYAELIDELENLFDLKGELRSRYKWSVTFTDDENELMLVGDDSWPVFCNVVKRLYIITTEELKKKNAKLKLPASSSDVEETLMSVDSQIRTAD 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01938 703 Coils Coil 612 632 - -
Bva08g01938 703 MobiDBLite consensus disorder prediction 684 703 - -
Bva08g01938 703 Gene3D - 292 364 - -
Bva08g01938 703 MobiDBLite consensus disorder prediction 687 703 - -
Bva08g01938 703 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Bva08g01938 703 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Bva08g01938 703 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Bva08g01938 703 Pfam AUX/IAA family 569 624 IPR033389 -
Bva08g01938 703 Pfam AUX/IAA family 634 672 IPR033389 -
Bva08g01938 703 SMART B3_2 131 233 IPR003340 GO:0003677
Bva08g01938 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva08g01938 703 Pfam Auxin response factor 257 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva08g01938 703 SUPERFAMILY CAD & PB1 domains 585 665 - -
Bva08g01938 703 MobiDBLite consensus disorder prediction 555 589 - -
Bva08g01938 703 CDD B3_DNA 130 231 IPR003340 GO:0003677
Bva08g01938 703 SUPERFAMILY DNA-binding pseudobarrel domain 122 260 IPR015300 -
Bva08g01938 703 PANTHER AUXIN RESPONSE FACTOR 11 13 686 - -
Bva08g01938 703 Gene3D - 128 232 IPR015300 -
Bva08g01938 703 Gene3D - 584 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01938 Bva-Chr8 13017108 13021548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01938 24 674 B3 DNA Binding Superfamily AT4G23980 55.188 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva08g01938 B3 6.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01938 K14486 - gmx:100795763 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01938 08 13017108 13021548 Bva08g01938 08 13017108 13021548 ECH