Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01936 ATGGAGCAACCACCATACACGGAAGATGACCTAGCCGCCGCAGCCTCCGCAGCAGAAAAATCTGACAACCCCGGTGGTGGTACCCGACACCCGGTATATCGTGGCGTCCGGAAGCGGCGGTGGGGTAAATGGGTGTCCGAAATTCGGGAGCCCCGCAAGAAATCTCGAATATGGCTCGGGTCTTTTCCGGCGCCTGAGATGGCTGCCAAGGCATACGACGTCGCAGCGAACTGCTTGAAGGGAAGGAAAGCGCAGCTCAATTTTCCTGACGAGGTCGAGGAGTTGCCGCTGCCGTCCACGTGTACAGCCAGGGATATTCAGGCAGCTGCAGCAAAGGCGGCGCGTATGATGATGAAACCTTCAACTTCAAAGAGCAGCATTACATCCTCGGACGGTGATGGCGACGGCGACGGCGATAGCCACAATGATGACTTCTGGGGTGAGATTGAGTTGCCGGAGCTGTTGCATAATGGGTACTACTGGAATTCTACATGTGCGCCTCCGTGGACTTCTTCCGGTGACATCACGGCATGGTCGGAGGCGGAGCTTCCTCCGCAGCCACCATTCATGGCTTGTTTATA 581 0.5663 MEQPPYTEDDLAAAASAAEKSDNPGGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAANCLKGRKAQLNFPDEVEELPLPSTCTARDIQAAAAKAARMMMKPSTSKSSITSSDGDGDGDGDSHNDDFWGEIELPELLHNGYYWNSTCAPPWTSSGDITAWSEAELPPQPPFMACL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01936 193 MobiDBLite consensus disorder prediction 119 133 - -
Bva08g01936 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 193 - -
Bva08g01936 193 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Bva08g01936 193 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Bva08g01936 193 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Bva08g01936 193 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Bva08g01936 193 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Bva08g01936 193 MobiDBLite consensus disorder prediction 1 32 - -
Bva08g01936 193 CDD AP2 33 90 IPR001471 GO:0003700|GO:0006355
Bva08g01936 193 MobiDBLite consensus disorder prediction 117 145 - -
Bva08g01936 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 193 - -
Bva08g01936 193 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Bva08g01936 193 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01936 Bva-Chr8 12992598 12993274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01936 1 193 AP2-EREBP Transcription Factor Family AT1G01250 55.500 1.09e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva08g01936 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01936 K09286 - tcc:18613963 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01936 08 12992598 12993274 Bva08g01936 08 12992598 12993274 ECH