Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01935 ATGATGATTGAGGTAGGTTTGTCTGGTGGGATGTGGAATGATGATGACAAGGCCCTGGTTGCTGCCGTTCTGGGCACTCCAGCTTTTGATTACTTGGTTTCCAGCTCTGTTTACAATGAGAACCTGTTAATGGCCGTCGGGAGTGACGGAAATTTGCAGAACAGGCTCTCGGATCTCGTGGAACGTCCCAACATGTCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATTTCGCAGACAAAATCTGGTGACTGGGTTCTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAAGGAAGGGGAAGAAGTTGGAGACAGAGGACTTAACGCTCTTCGGCTCGAGGATGAGATGCAGCAGAGGATGAGGAAGAGGGTTCTGCAGAAGCTGCACACATCTTTTGGTGGTTCAGATGAGGACAATTATGCATATGGACTAGACCGTGTAACTGATACAGAGATGTTCTTCTTGGCCTCTATGTACTTCTCATTTCCTCGCGGGCAGGGTGGGCCAGGTAAGTGTCTTGCCTTCGGGAAGCATTTTTGGCTCTCAGATGCTCTAAAATCAAGCTCTGACTACTGCGTAAGATCATTTCTGGCTAAATCCGCTGGAATTCAGACTATTGTTTTAGTCCCCACTGATACTGGAGTATTGGAATTGGGTTCTGTGAGAATGGTGGCAGAGAGCTTAGAATCGTTGCAGGCTATAAAGTCTGCTTTTTCTTACCCCCACTCTTCGTTCTCAGGCATTAAACCAATTTCACCCTTGCCTGTGGtgaatgagaagaaagatgaaaacgTTCTCTTTTCTGGGTTAGCAAGTGCTGATAAAGTAGAAGGAGTTCCAAAGATTTTTGGGCATGATTTGAACTCTGCTAACTCGGGTCGTACCCATTTCAGGGAGAAACTTGCTGTTAGAAAGATGGAGGCGAGGCCATTGGGGGGTTATTCCAATGGGAATAGCTTTAACTTTCCGAGTGCTAGAAATGGTGTTCATGTTTCAAGTTGGGTGGCTAATCAAGATGTAAGACAAGCTAATCATGCAGAAATTTATGCTCCTAGGTCCTCAGCAAGCAATGCGCCTGAGCTGGTTAATGGAGTCAGGCAAGATTTTAGGCTCAATAACTATCCACCTCAAAGGCATGTGCAAATGCAGATTGATTTCTCGGGAGCCACTACAAAGCCTTCTGTGAGACCTATGAATGCAGCTGAACCAGAGGTTCCTGATATTGATGCTTCATACAAAGAAGAGCCGGCTGGTCCATCAGAGGAAAGGAGGCCGAGGAAGCGGGGAAGAAAGCCTGCAAATGGAAGGGAAGAGCCTCTCAATCACGTGGAAGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCGAATATCTCAAAGATGGATAAGGCCTCTTTGCTGGGAGATGCCATTGCTTATATCAATAATCTTCAGGAAAAGCTCAGGATCATGCAAGCTGAGAGAGAGCAACTTGGAAGCACTTCAAGGGAAGGATCAATGCTCGATGCTAACCCAAAACCCGAAAACCAGAACCTTGCTCCTGATGTGGATATTCAAGCTTCCCAAGATGAAGTCGTTGTGAGGGTAAGCTGCCCTCTTGATGCTCACCCTGCTTCAAGAGTAATCCAGGCATTCAAAGAGGCCCAAATCAGTGTTATTGAGTCAAAACTTGCTGCTGCAAATGATACTATCTTCCACACCTTTGTGATCAAGTCTCAGGGATCTGAACAGCTGACGAAGGAGAAGTTGATTGCAGCATTTTCCCGGGAATCCAACATCTTACAGCCAGTGCCATCAGTTGGGTA 1838 0.4641 MMIEVGLSGGMWNDDDKALVAAVLGTPAFDYLVSSSVYNENLLMAVGSDGNLQNRLSDLVERPNMSNFSWNYAIFWQISQTKSGDWVLGWGDGCCREPKEGEEVGDRGLNALRLEDEMQQRMRKRVLQKLHTSFGGSDEDNYAYGLDRVTDTEMFFLASMYFSFPRGQGGPGKCLAFGKHFWLSDALKSSSDYCVRSFLAKSAGIQTIVLVPTDTGVLELGSVRMVAESLESLQAIKSAFSYPHSSFSGIKPISPLPVVNEKKDENVLFSGLASADKVEGVPKIFGHDLNSANSGRTHFREKLAVRKMEARPLGGYSNGNSFNFPSARNGVHVSSWVANQDVRQANHAEIYAPRSSASNAPELVNGVRQDFRLNNYPPQRHVQMQIDFSGATTKPSVRPMNAAEPEVPDIDASYKEEPAGPSEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINNLQEKLRIMQAEREQLGSTSREGSMLDANPKPENQNLAPDVDIQASQDEVVVRVSCPLDAHPASRVIQAFKEAQISVIESKLAAANDTIFHTFVIKSQGSEQLTKEKLIAAFSRESNILQPVPSVG 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01935 612 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Bva08g01935 612 Pfam Helix-loop-helix DNA-binding domain 443 489 IPR011598 GO:0046983
Bva08g01935 612 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 439 488 IPR011598 GO:0046983
Bva08g01935 612 Gene3D - 432 504 IPR036638 GO:0046983
Bva08g01935 612 MobiDBLite consensus disorder prediction 409 450 - -
Bva08g01935 612 CDD bHLH_AtAIB_like 436 508 - -
Bva08g01935 612 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 603 - -
Bva08g01935 612 SMART finulus 445 494 IPR011598 GO:0046983
Bva08g01935 612 MobiDBLite consensus disorder prediction 391 450 - -
Bva08g01935 612 PANTHER MYC 1 603 IPR045084 GO:0003700|GO:0006355
Bva08g01935 612 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 442 506 IPR036638 GO:0046983
Bva08g01935 612 Coils Coil 485 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01935 Bva-Chr8 12982300 12984961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01935 11 612 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.690 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01935 bHLH-MYC_N 7.5e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01935 - - qsu:111989355 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01935 08 12982300 12984961 Bva08g01935 08 12982300 12984961 ECH