Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01932 ATGGAGATTTTTAAACAGCAATCTGGAGATAGTACGAAACGTGTCGTTAGCAGATCATGCGAAACTCCCGCGAcgaagaagaggaggaaggCGGCAAAGGTTGGCAGTGGATCCGAGGCCAATGATGCGTCTGAATCCGAGTTTACTCGGAATTCGGTGCGAAATCGAAAGTGGAAGCTCCGAGCTGGTAGAGAGAAGATAGCTGCTGATGGTTCTGGTAAAATCCAGAAAAAATCACCTAAGGCGTTGTCTGTAGGTGGTGGAGACTCTGACTCCGGTGTACGGAACGGTGGCTCCGGCCAAGGACGGGGCACGAAATGTTCATCGGGAATGGGTTTATCCAGCAAAACTAAGAAGGGTggaagtttaatgtgtcatcaGTGCCAGCGGAATGATAAGAGCGGTGTTGTCTTCTGCTCAAATTGTAACAGAAAACGCTACTGCTATAAGTGCCTTAAGAAGTGGTAcccaagaaaaacaagagaggaagtTAACAATAGATGCCCATTTTGTTGTGGTAACTGTAACTGCAAAGCTTGCCTGCGGGAGGTTCCAGTGTTAGAGCATCCAGAAGTAGATGACGATGTCAAATTACAACGGCTGCTGTACTTACTATGTAAAGGTCTGCCAGTTTTGAGGCGTATTTATAAGGAGCAGAGCTCTGAACTAGAGATTGAGGCTAAAATAAGGGGTAACCAACTGCGAGAAATTGACATAACGAGAACAAAGCTAGAAAAAAGGGAACGTCTATACTGTGACAATTGCAATACATCTATTGTTGGATTTTACCGAAGCTGCCTCAGTGACTGTTGCTCTTATGATCTTTGTCTCACGTGCTGTCAAGAGCTCAGAGAGGGTTCCCAGCCCGGAGGCTTATTAGCTGAAACGTCTCATGAGCAGTTTGTAGAGAGAGTTCGTAGCCAAGGTCCAACAAGGAATCATATAAAGAcacatgggaaaaaaaatgagtggGAGAGCCAACCGGCACCTAGTGCTTTTGATGATATTCAAGCTGATATATCCTCTCCCTTTCCTGAATGGAGAGCTAATATTGATGGTAATATTCCATGCCCTCCGAAAGAGCGTGGAGGTTGCGGTATGGCATTACTAGAATTGAGACGCATTTTTAAAGCTAATTGGGTAGAGAAGCTGATAAAGAATGCGGAGGATCTCACTAGAGACCACACTCTACCGGACGTAGATTTTTTAAACTGTTCTAAATGCCAGCCAAATTTGTTTGAAGGGAAAATTAATTCTGACGTCAGGCAGGCGGCATTGAGGGATGATAGTCATGATAACTTTTTATACACCCCGAATGCTCTTGACTTGTCTGATGATGAAATTGAGCATTTCCAGTGGCACTGGATGAAGGGAGAACCTGTGGTTGTGAGAAACGTTATGGAGAAGACATCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTTTCAGAGAAACAGGTTCAAGGGTGAAGTTCAAGGAAGAAACACGAAGTGTAAAGGCCATTGATTGCTTGGATTGGTGTGAGGTGGAAATTAATATTCACCAATTTTTCCAAGGCTACTTAGAGGGTCGAATGCATGAAGATGGGTGGCCAGAAATGTTGAAACTGAAAGATTGGCCTTCCTCAACTTTGTTTGAAGAGCGTTTGCCCAGGCATGGTGCTGAATTCTTTTCTGCACTACCCTACAAGGACTACACTGATCCAAAGTCAGGTCTTCTAAATTTTGCCAGTAAGCTTCCTGATGAGTCACTTAAACCAGATTTGGGGCCCAAAACATATATTGCTTATGGATTTTCTGAAGAACTTGGTCGAGGTGATTCAGTGACAAAGCTGCATTGTGATGTGTCTGATGCGGTCAACATACTGACACACACAACCAAGGTTTCTCCCTGGCAGCAAGAAAAGATAGGAATGCGGAAACATGTTGACAAGGTAGAGCATGGGATTAACAGTATTTCATCAAGTATCCAAGTGGATGAATGTAATTCATCTCTAGCTGAAGACAGGAGTGAGAAATTAGAAACAAATGGCACTGGACAATTTGATGAGAAAAGCTCCTTTGCAGAAAATGGTCTTAGTGTGACCTCTACTTCTGAGGTTTTATTTCATGCCAAGACTTTAGAACCGGAACATGATACAAGTAATGAGCAACACATAATGAAGGTTGATCTTTTAGAGAGTAACGTGTCTGATGATCCGGAGCTGCTAAGAGAGTCAAGACAAGGTCTGGGAATTGATTCCACGAAAGCTGATAATGGATCTGAGGTTGTCGATGGTGGTGCTGTTTGGGACATCTTCCGTCGGCAAGATGTTTCTAAGATAAATGAGTATTTAAGAAAGCATCAGAAGGAATTCCTCCATCTCCTCAATCATCCTATAACTTCTGTGATACATCCCATACATGATCagacatttttcttcaatgaaCATCATAAGAAACAACTGAAAAAGGAGTTCAATGTAGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCCGCAGGGTGTCCTCATCAAGTGAGAAATAGACAATCTTGTATTAAGGTGGCACTTGACTTTGTTTCTCCTGAAAACATTGGAGAATGCTTGCGGCTCACTGAAGAGTTTCGTTTGCTCCCAAAAAACCACAGATCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACACTTTACGCTGTTAGTTCGGCTATTAAAGAAGTCGAAGAGCTGATGATGGCTGCCAATAATTATGGCAGCACTAGCAGCTCTAGTGGTGAGCACGCCTCTCAACCAGAAGCTGGTCCCTCAAGGCCTAGCCTCAAGTCCACCACTGTTTCCCATTA 2840 0.4211 MEIFKQQSGDSTKRVVSRSCETPATKKRRKAAKVGSGSEANDASESEFTRNSVRNRKWKLRAGREKIAADGSGKIQKKSPKALSVGGGDSDSGVRNGGSGQGRGTKCSSGMGLSSKTKKGGSLMCHQCQRNDKSGVVFCSNCNRKRYCYKCLKKWYPRKTREEVNNRCPFCCGNCNCKACLREVPVLEHPEVDDDVKLQRLLYLLCKGLPVLRRIYKEQSSELEIEAKIRGNQLREIDITRTKLEKRERLYCDNCNTSIVGFYRSCLSDCCSYDLCLTCCQELREGSQPGGLLAETSHEQFVERVRSQGPTRNHIKTHGKKNEWESQPAPSAFDDIQADISSPFPEWRANIDGNIPCPPKERGGCGMALLELRRIFKANWVEKLIKNAEDLTRDHTLPDVDFLNCSKCQPNLFEGKINSDVRQAALRDDSHDNFLYTPNALDLSDDEIEHFQWHWMKGEPVVVRNVMEKTSGLSWEPMVMWRAFRETGSRVKFKEETRSVKAIDCLDWCEVEINIHQFFQGYLEGRMHEDGWPEMLKLKDWPSSTLFEERLPRHGAEFFSALPYKDYTDPKSGLLNFASKLPDESLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNILTHTTKVSPWQQEKIGMRKHVDKVEHGINSISSSIQVDECNSSLAEDRSEKLETNGTGQFDEKSSFAENGLSVTSTSEVLFHAKTLEPEHDTSNEQHIMKVDLLESNVSDDPELLRESRQGLGIDSTKADNGSEVVDGGAVWDIFRRQDVSKINEYLRKHQKEFLHLLNHPITSVIHPIHDQTFFFNEHHKKQLKKEFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENIGECLRLTEEFRLLPKNHRSKEDKLEVKKMTLYAVSSAIKEVEELMMAAKVSEPIDQHQIQPSL 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01932 928 ProSiteProfiles Zinc finger RING-type profile. 125 171 IPR001841 -
Bva08g01932 928 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 14 642 IPR045109 GO:0032454|GO:0033169
Bva08g01932 928 SUPERFAMILY Clavaminate synthase-like 448 899 - -
Bva08g01932 928 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 657 912 IPR045109 GO:0032454|GO:0033169
Bva08g01932 928 MobiDBLite consensus disorder prediction 1 112 - -
Bva08g01932 928 SMART cupin_9 551 876 IPR003347 -
Bva08g01932 928 MobiDBLite consensus disorder prediction 94 112 - -
Bva08g01932 928 ProSiteProfiles JmjC domain profile. 570 876 IPR003347 -
Bva08g01932 928 MobiDBLite consensus disorder prediction 20 35 - -
Bva08g01932 928 MobiDBLite consensus disorder prediction 1 19 - -
Bva08g01932 928 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 14 642 - -
Bva08g01932 928 MobiDBLite consensus disorder prediction 306 328 - -
Bva08g01932 928 Gene3D Cupin 435 885 - -
Bva08g01932 928 MobiDBLite consensus disorder prediction 667 686 - -
Bva08g01932 928 Pfam JmjC domain, hydroxylase 763 859 IPR003347 -
Bva08g01932 928 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 657 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01932 Bva-Chr8 12964740 12972850 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva08g01932 JmjC 1.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01932 K15601 - vvi:100258626 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01932 08 12964740 12972850 Bva08g01932 08 12964740 12972850 ECH