Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01922 ATGATAATTAAGCGAaccatgaaaattgaaatgccGAACCTAAAGCGTTGTAAAATGGAGGAGGTGGATTCCGACGAGTATGGGTTTGATGCGGTTCCGAAGAAACGGAGGGTGAATGGGTTTTACTCTCTTGGTATGCCTGGTGAGGCTGAAGATTTTAGCAGTGGTTCAGGGTCTTGGTCCAGTGAAGGTTCATACTGGGGCAATGGGGAGGTCCAGTCAAAATCAAATTCGGTACGATTGAATAGAAGAACAGCACTACGAGGTTCGGAAGGGTTTCGGCCTCCATTGTTAAAGTCCTCTCGAGGTCGTCCTCAGATGCTTCCGTCGAGGTTCAATGATTCAGTTATTGACATATGGAAGAAAGAAGGTATTAAAGTGGAGGACACAGACTCCAGCTTTGAAggtgataatatttttgtagatGACAGAGCAGGAATTAGTGGATTGGGGTttgtgaaaaaggaaaagagagataaCTATAGCTTCAAAAGTTCGAAGTGTTACCCATATCCAGAACTGGACGATAAACCAGAAATAGATGGCTTCGGTTTCAACAATGTTGATAACAAAAAGCATGCAAATTCATTTAGTAGCATTATGAACACAGTGGACGGGAATCGTTCTTTTTTAGCAATAACTGAGAGTCATTCTTCCGGACATAGTTTAGAGAGTGCAGACCAAAAGCATAGTAGAAATGCCGAGAAGAGGAAGGACATCTACAAACCAGAGGATTTTGCGCTGGGAGATATAGTTTGGGCAAAATGTGGGAAGAGATATCCGGCTTGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCTCCTGAAGCAGTCCTGAGCTGTTGCATTCCTGGCGCAATTTGCGTGATGTTTTTTGGATATTCAAGAAATGGAAAGCAAAGGGATTACGCATGGGTGAAGCAAGGAATGATATTTCCCTTCATGGAATTCATGGGCAGATTCCAGGGACAGACCCAGTTGTACAAGAGCAAGCCAAGTGACTTTCAGATGGCACTGGAGGAGGCATTGTTGGCAGAAGATGGTTTTCTGGACTCGAGCCTGGGAACTGAGCAAATTACTGATATTGAAGCCCATCCCAGTGGATATATAGAGGCTACCAATTCATATGTTGATCCGGAGTATTACTCCCAGGATCTGGTTAATTATCATAGGGATTCAAGACATTGTACTGGCTGCGGTTTAATTTTGCCATGCAAAAGCACGAAGAAGataaaagattcaaaatgTGGAACTCAACTTTATTGTAAACATTGTGCAAAGTTAcgaaaatcaaaacaatattGCGGcatttgcaataaaatttgGCACCATTCAGATGGTGGGAACTGGgtttGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATCTCAAGCAAACTGTTCAAGGATCTGGAAAATAAAGATTACTATTGTCCAGATTGCAAGCCAAAATTCAACTCTAAATTTCAAGCCTCACAATCATACAAGTCAAAAATCAAATCAATAGAGAATAACCTAAAAACTGAGATACCTGACAAGATAACAGTGGTGTGCAATGGCATGGAAGGATTTTACATTCCAAAACTTCATTTAGTTTTGTGCAAGTGTGGTTCATGTGGGTCAAGGAAGCAGACACTGAGTGAATGGGAAAGGCATACAGGCTGCAGAgctaaaaaatggaaatacaGTGTGAAAGTAAAGAGTACAATGCTACCTTTGGAAAAATGGATCTCAGAGCACAATACACATGGTGTTGTTTCCATGCAATTAGATCAGCAGCAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCTGTTTATGCAAAATGGACAACAGAAAGATGTGCAGTTTGTAGATGGGTTGAAGATTGGGatgataacaaaattattatctgCAACAGGTGCCAAATAGCAGTCCATCAAGAATGCTATGGGGCCAAGAATGTTcaagatttttcttcttgggtTTGTAGAGTATGTGAAACCCCTGATGTTGAGAGAGAATGTTGCCTCTGCCCTGTTAAAGGTGGTGCAGTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACGTGTGCTTGGTTCCGGCCTGAAGTTGGTTTCTCAAACCATGAAACGATGGAGCCTGCCTTTGGAATCCTGAAAATTCCTCCAACTTCCTTTTTGAAGACTTGTGTTATCTGCAAACAAGCTCATGGTTCCTGCACCAGTTGTTGCAAGTGTGCAACTTATTTCCATGTGATGTGTGCATCAAGAGCTGGGTACAGCATGGAATTGCATTCCATGGAGAAGAATGGGAGTCAGATAGTAAAGAAGCTCATATATTGTGCATTTCACAGGCCTCCAAACCCAGATTCAGTACTGGTTGTACATACTCCCCTGGGGGTTTTCTCACCTAGAACTTCACTACAAAATCAGAAGGGATGCTTCAGGGGTTCAAGGTTGGTTTCAGCAAAGAACGTAGAACTTCTTGAATCTTCAACCTCTGAGACTAATGAGTTTGAGCCACTCTCTGCTGCAAGATGTCGTGTATACACATGTTCTCCTAAAAAGAAGGCTGATGTGCCCGTAATCCATTTATTGAGGGGACCAAACCATCATTCTTTATGTTCAATAACTCAATTGAACAGCTATGAGGATGCTGGagattctaaaatatttacttcATTAAAGGAAAGACTTCGCTATCTACAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGAATACATGGATGGGGCCTCTTTGCACGTAGAAATATACAGGAAGGAGAAATGGTTACTGAGTATCGCGGTGAACAGGTGAGGCGCAGTGTTGCTGATATGAGGGAGGCAAAATATCGTTCGGAAGGCAAAGATTGTTATCTGTTTAAGATCAGTGAAGAAGTGGTAATTGATGCAACACATAAGGGCAACATAGCACGCTTGATAAACCATTCCTGCATGCCAAACTGCTATGCAAGAATCATGAGTTTGGGTGAAGATGAGAGCCGGATTGTTCTAATTGCCAAGACCAATGTTTCTGCTGGTGAAGAATTAACGTACGATTACTTGTTTGATCCAGATGAGCGAGATGAACTGAAAGTTCCCTGCCATTGTCAAGCCCCCAGTTGTAGGAAATTTATGAACTA 3152 0.402 MIIKRTMKIEMPNLKRCKMEEVDSDEYGFDAVPKKRRVNGFYSLGMPGEAEDFSSGSGSWSSEGSYWGNGEVQSKSNSVRLNRRTALRGSEGFRPPLLKSSRGRPQMLPSRFNDSVIDIWKKEGIKVEDTDSSFEGDNIFVDDRAGISGLGFVKKEKRDNYSFKSSKCYPYPELDDKPEIDGFGFNNVDNKKHANSFSSIMNTVDGNRSFLAITESHSSGHSLESADQKHSRNAEKRKDIYKPEDFALGDIVWAKCGKRYPAWPAIVIDPILQAPEAVLSCCIPGAICVMFFGYSRNGKQRDYAWVKQGMIFPFMEFMGRFQGQTQLYKSKPSDFQMALEEALLAEDGFLDSSLGTEQITDIEAHPSGYIEATNSYVDPEYYSQDLVNYHRDSRHCTGCGLILPCKSTKKIKDSKCGTQLYCKHCAKLRKSKQYCGICNKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENKDYYCPDCKPKFNSKFQASQSYKSKIKSIENNLKTEIPDKITVVCNGMEGFYIPKLHLVLCKCGSCGSRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWISEHNTHGVVSMQLDQQQVLAFLQEKYEPVYAKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVQDFSSWVCRVCETPDVERECCLCPVKGGAVKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPTSFLKTCVICKQAHGSCTSCCKCATYFHVMCASRAGYSMELHSMEKNGSQIVKKLIYCAFHRPPNPDSVLVVHTPLGVFSPRTSLQNQKGCFRGSRLVSAKNVELLESSTSETNEFEPLSAARCRVYTCSPKKKADVPVIHLLRGPNHHSLCSITQLNSYEDAGDSKIFTSLKERLRYLQKTENHRVCFGKSGIHGWGLFARRNIQEGEMVTEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGEDESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCHCQAPSCRKFMN 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01922 1050 CDD PHD_TCF19_like 435 485 - -
Bva08g01922 1050 ProSiteProfiles Extended PHD (ePHD) domain profile. 670 785 IPR034732 -
Bva08g01922 1050 SMART PHD_3 618 665 IPR001965 -
Bva08g01922 1050 SMART PHD_3 434 486 IPR001965 -
Bva08g01922 1050 SMART PHD_3 729 785 IPR001965 -
Bva08g01922 1050 PANTHER PHD FINGER PROTEINS 1 1050 - -
Bva08g01922 1050 Gene3D SET domain 821 1050 IPR046341 -
Bva08g01922 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 490 IPR013083 -
Bva08g01922 1050 Gene3D - 239 347 - -
Bva08g01922 1050 ProSiteProfiles Zinc finger PHD-type profile. 432 488 IPR019787 -
Bva08g01922 1050 CDD SET_SETD1-like 897 1046 - -
Bva08g01922 1050 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1050 - -
Bva08g01922 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 786 IPR013083 -
Bva08g01922 1050 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1050 IPR025780 -
Bva08g01922 1050 SMART set_7 908 1031 IPR001214 GO:0005515
Bva08g01922 1050 SMART PostSET_3 1034 1050 IPR003616 -
Bva08g01922 1050 Pfam PWWP domain 249 344 IPR000313 -
Bva08g01922 1050 SUPERFAMILY SET domain 899 1047 IPR046341 -
Bva08g01922 1050 ProSiteProfiles Zinc finger PHD-type profile. 616 667 IPR019787 -
Bva08g01922 1050 ProSiteProfiles SET domain profile. 908 1025 IPR001214 GO:0005515
Bva08g01922 1050 Pfam SET domain 919 1024 IPR001214 GO:0005515
Bva08g01922 1050 Pfam PHD-finger 434 488 IPR019787 -
Bva08g01922 1050 SMART PWWP_4 246 315 IPR000313 -
Bva08g01922 1050 SUPERFAMILY Tudor/PWWP/MBT 239 364 - -
Bva08g01922 1050 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Bva08g01922 1050 CDD PHD_ATX3_4_5_like 618 664 IPR042011 -
Bva08g01922 1050 ProSitePatterns Zinc finger PHD-type signature. 619 664 IPR019786 -
Bva08g01922 1050 SUPERFAMILY FYVE/PHD zinc finger 617 681 IPR011011 -
Bva08g01922 1050 Pfam PHD-zinc-finger like domain 672 784 - -
Bva08g01922 1050 SUPERFAMILY FYVE/PHD zinc finger 432 494 IPR011011 -
Bva08g01922 1050 Pfam PHD-finger 631 665 - -
Bva08g01922 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 667 IPR013083 -
Bva08g01922 1050 ProSiteProfiles Post-SET domain profile. 1034 1050 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01922 Bva-Chr8 12900445 12907949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01922 390 459 EF-hand Containing Proteins AT5G28340 58.571 1.48e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva08g01922 zf-HC5HC2H_2 3.8e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01922 - - gmx:100793624 1564.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01922 08 12900445 12907949 Bva08g01922 08 12900445 12907949 ECH