Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01920 ATGGAGGAAATTAACAGCAACAGCAAGAACAAAGTCTACAATCTCCTCGTTAAGCTGTTGGATGGAAAAACCCTAGCCCTACGATTCCCATCTCCGACCTTATGCGCGAATTCCATAAAGGATCGTCTTTACGAAGTTACCAGAATCCCGCCACAACACCAGCGCCTCCTCACTGGCGTTCAACACCTCGACGATGAGAAATCTATCATCTCCTGCTCCCCCGACGGGAGGGAGATGTTCCCCATCGTCCACCTGTTGTTACGGCTTTCTGGTGGCAAGGGAGGTTTCGGGTCACTTTTGCGTGGCGCGGCTACGAAGGCTGGGCAGAAGAAGACAAACAATTTCGATGCTTGTAGAGATATGAGTGGACGAAGGCTAAGACACGTAAACGCAGAGAAGAGATTGGAGGAGTGGAAGGCAGAGGAGGCCGAGAGGAAACTGGAGAGAGTGGCGGAAGAGTTTCTGAAGAAGCAAGCTAAAAAGGGTAAGAAGGGTGTGGGTGAAGGCGAGGCACAGAAGTATGTCGCCAAATATAGGGAGGTGTCGGAACGGTGCTCAGCAGAGGTTGCAGAATCAGTAAAGGAGGCTTTCATGTCGCTTAACGGAAAGAGAAAGGATTCAGAAActgcaaaagataaaaaagattcaaaaaagCTGAAGATATGGATGGGGAAGAGAACATTAAATGAAAGCGATAGCGATGAAGATGAAAGTGATGATGAAGGGGAGAATGACAAACCTGTTGTATTAAATATTGGGAACGACTCAGATTCAAACAGGGAATCTGATGGCAGTCCAAGATCAGTAATTGGTGAGAAACGGGTTGGAGAATCTTCTGGTTCAGGCTCGCCGGAAAGTGGGtctgaagaagagaaagagactgATACAAGTGGCAAAGTAGAATCTGGTGAATGCCCGACTAGTGAGTCTCTTCAGGCTGAAGCTGCTGAACCTAGCGGTGTGATTGAACCTGTGATACATGCTGAAAAGATCACAGAGGATGCAGGAGCTATGCCATGTTCAGAGTCTTTGGTTTGTGCAATTAAGGCTGAAGAAGCTGCAAAACACGATGGTGGTATGGCCGAATCTGACAAGTTTGATGTAGCTGTTGGTCAACCATCAAATATTCTGAGTGCAGAACATGTAACCGATTCTAGCAGATCAAATGATATGGAAATTGACAGATCCGTTGAATGTAAAGCATCGGTTCATGACGAAACCTTCACAAGTGCCAGTGTTCCACAAATAGAGGAGCCTCTGAATTTTGATGCTATTCATTCTGCCACTGAACTTGAGGTTCTTGGAATGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGATTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCTCggcttttccttttaaaatcgACCCCACTGGATAAACTTCCCAAAAAGCTACTAGCAAAGAAATG 1442 0.4452 MEEINSNSKNKVYNLLVKLLDGKTLALRFPSPTLCANSIKDRLYEVTRIPPQHQRLLTGVQHLDDEKSIISCSPDGREMFPIVHLLLRLSGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEEAERKLERVAEEFLKKQAKKGKKGVGEGEAQKYVAKYREVSERCSAEVAESVKEAFMSLNGKRKDSETAKDKKDSKKLKIWMGKRTLNESDSDEDESDDEGENDKPVVLNIGNDSDSNRESDGSPRSVIGEKRVGESSGSGSPESGSEEEKETDTSGKVESGECPTSESLQAEAAEPSGVIEPVIHAEKITEDAGAMPCSESLVCAIKAEEAAKHDGGMAESDKFDVAVGQPSNILSAEHVTDSSRSNDMEIDRSVECKASVHDETFTSASVPQIEEPLNFDAIHSATELEVLGMERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01920 480 MobiDBLite consensus disorder prediction 300 314 - -
Bva08g01920 480 ProSiteProfiles Ubiquitin domain profile. 13 92 IPR000626 GO:0005515
Bva08g01920 480 SUPERFAMILY Ubiquitin-like 12 92 IPR029071 -
Bva08g01920 480 Coils Coil 126 160 - -
Bva08g01920 480 MobiDBLite consensus disorder prediction 203 320 - -
Bva08g01920 480 Pfam Replication stress response SDE2 C-terminal 410 479 - -
Bva08g01920 480 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 14 479 - -
Bva08g01920 480 Gene3D - 5 94 - -
Bva08g01920 480 MobiDBLite consensus disorder prediction 203 232 - -
Bva08g01920 480 Pfam Silencing defective 2 N-terminal ubiquitin domain 13 163 IPR024974 -
Bva08g01920 480 PANTHER SPLICING FACTOR SF3A-RELATED 14 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01920 Bva-Chr8 12893164 12895923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01920 413 479 C2H2 Transcription Factor Family AT5G06160 46.269 1.73e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01920 K25059 - gmx:100781694 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01920 08 12893164 12895923 Bva08g01920 08 12893164 12895923 ECH