Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01918 ATGAATGCAGAGGGACGTAAGTTTGTGAGGTTTGCACATTGGAGTTCAGAATCATCTTCTAGTGTTGAGCAGCAAAATTCTGACAATGGACATGAAGGAAGAAAACTCGGGCCAAGCATAAGTGCTGTTTTAAAGAGTATCCGAAGAAGAATTGAGAGTGGTTCTGAGAATATCAGAAGCTTGAGAAAATCCTCAGCTGTTCATCCTGTAAGTGATGGGCCTCTTAAAAAAAGTGCCTCTGGGAGAAAAGTTCTTGATCCTCAGGGGCGAGTCCTTCAAAGATGgaacaaaatatttgtgaTTACGTGTTTTTTGGCACTCTTTGTGGATCCACTCTTCTTTTACGTCCCAATGATTGATGGAAAGAACAAGTGCCTTCAATTAGATGAACCATTGCTGGTCACTGTTTCTGTACTCCGTACATTCATTGATGTTTTCTATGTTCTTCGCATAATCTTCCAGTTTAAAACTGGGTTCATCGCTCCTTCTTCTCGAGTATCTGGAAGGGGTGAACTAATCGATGATCCTCTGGCTATAATCAAAAGATACTTGTGTTCCTACTTCATCATTGACATCCTTTCAATTATTCCCATACCGCAGGTGAtcgttttatttattattccaaAGCTAAAAGAGGGATTATTTCCATTTGTGGCGAAGGAGTTGTTGAAGTATGTAGTATTAGTTCAGTATGTGCCAAGATTTATAAGGATGCATCCATTAACCAGAGAACTTGCTAGAACTGCACCTATACTTGCAGAGACTGCATTGCCTGGAGTTCAGTTTAGTCTTTTTGCCTATATGCTCTTAAGTCATGTTGTCGGTGCTCTCTGGTACCTGTTTTCCGTGGAATCAGGGATTCGGTGTTGGCGTCAAAGTTTGATGCTTGCTAACTTGTCTGACAAATTACACTTGAGCTGTGAAAACGTCACCAAGGATTCCCTTGAAGTTATAAAGAGAAACTGCACTCTCACTGATCCTAATGATATTAAAGATTCAGCAATTTACAATTTCGGGATATTTATAAACGCTCTAACATCTCAAGTCGTAGAATCAACAAAACCTTTTTATGAGAAGTTCTTATACTGCTTTTGGTGGGGTCTGCGCAATCTTTGTTCTTTTGGCCAAAACCTCATGCCAAGTACGGATGTTTGGGAGATACTCTTTTCCATTTGCATTGCCATCTTGGGACTTGCTTATTTGGCGGCACTTTTTGGAATAAACATGCAGTTTGTTGCTTCCCAATTTCGACGTCTCCACAACAAGCAGCTTCAGCACACTTTCAGGTTTTATTCTGTGCAATGGAGAACATGGGGTGCCTGTGTCATACAAGCAGCTTGGCGTCGCCattgtaaaaagaaagttgagaGATCATTACGTGAAGCAGAAGATAGGCTACAAGATGCTTTGGCAAATGAAGAATATAGGCACAAGCCAAGTCTTGGTGCCACAATATTTGCATCAAGGTTTGCTGCCAATGCAATGCGAAACCTGCGACAGAATGGTGGGTGCAGGAACAGATTCCCACAGAGAATGCTACCTCTGCTGCCTCAGAAACCAGCTGAGCCTGATTTCACGGCTCAACAACACTAGTTTGCACATTGGAGTTCAGAATCATCTTCTAGTGTTAAGCAGCAAAATTCTAATAGTGGACATGAAAGAAGTAAACTCGGGCCAAGCATAAGTGCTGTTTTAAAGTGTATCAGAAGAAGAATTGAGAGTGGTTCTGAGAATATCAGAAGCTTGAGAAAGTCCTCAGCTGTTCATCCTTTTGTTGCTTCCCAATTTCTACGTCTCCAAAGCAAGCATCTCCAGGCCATTTTCAGGTTTTGTTCTGTGCAATGGAGAACATGGGGTGCCTTAGTTATACAAGCATCTTGGCGACACTATtgcaaaaagaaagttgagaGATCATTacgtgaagaagaagataggCTACAAGATGCTTTGGCAAATGAAGAAGATGGGCACACGCCAAGTCTTGGTGCCACAATATTTGCATCAAGGTTTGTTGCCAATGCAATGCGAAACCTGTG 2036 0.4013 MNAEGRKFVRFAHWSSESSSSVEQQNSDNGHEGRKLGPSISAVLKSIRRRIESGSENIRSLRKSSAVHPVSDGPLKKSASGRKVLDPQGRVLQRWNKIFVITCFLALFVDPLFFYVPMIDGKNKCLQLDEPLLVTVSVLRTFIDVFYVLRIIFQFKTGFIAPSSRVSGRGELIDDPLAIIKRYLCSYFIIDILSIIPIPQVIVLFIIPKLKEGLFPFVAKELLKYVVLVQYVPRFIRMHPLTRELARTAPILAETALPGVQFSLFAYMLLSHVVGALWYLFSVESGIRCWRQSLMLANLSDKLHLSCENVTKDSLEVIKRNCTLTDPNDIKDSAIYNFGIFINALTSQVVESTKPFYEKFLYCFWWGLRNLCSFGQNLMPSTDVWEILFSICIAILGLAYLAALFGINMQFVASQFRRLHNKQLQHTFRFYSVQWRTWGACVIQAAWRRHCKKKVERSLREAEDRLQDALANEEYRHKPSLGATIFASRFAANAMRNLRQNGGCRNRFPQRMLPLLPQKPAEPDFTAQQHFAHWSSESSSSVKQQNSNSGHERSKLGPSISAVLKCIRRRIESGSENIRSLRKSSAVHPFVASQFLRLQSKHLQAIFRFCSVQWRTWGALVIQASWRHYCKKKVERSLREEEDRLQDALANEEDGHTPSLGATIFASRFVANAMRNL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01918 677 Gene3D - 97 413 - -
Bva08g01918 677 MobiDBLite consensus disorder prediction 13 27 - -
Bva08g01918 677 Pfam Ion transport protein 94 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 410 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 529 589 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 590 677 - -
Bva08g01918 677 SUPERFAMILY Voltage-gated potassium channels 86 409 - -
Bva08g01918 677 MobiDBLite consensus disorder prediction 535 555 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 403 528 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 410 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 529 589 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 590 677 - -
Bva08g01918 677 Coils Coil 452 472 - -
Bva08g01918 677 Coils Coil 631 651 - -
Bva08g01918 677 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 403 528 - -
Bva08g01918 677 MobiDBLite consensus disorder prediction 1 39 - -
Bva08g01918 677 MobiDBLite consensus disorder prediction 535 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01918 Bva-Chr8 12882481 12890398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01918 1 677 Ion Channels AT5G53130 40.387 1.42e-150 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01918 K05391 - rcu:8274372 464.922