Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01917 ATGTATGCAAAGGGACCTAAGTTTGTGAGGTTTGCCGATTCGAGTCCAGAATCATCTTTCAGCATTGAGCAGCAAAATTCCAGCAACGGATATGAAGGAGGAAGAAAACTCAGGACAAGCGTAAGTTCTGTTTTAAAGAGTATCAGAAGAAGAATTGAGAGTGGTTCTGAGAATATCAGAAGCTTTAGAAAATCGTCAGCTGTTCATCCTGGAAATGATGGGCCTCCCAAAAAAGGAGCTTCTGGGAGAAAAATTTTTGATCCTCAGGGATCAGTCCTTCAGAAATGGAACAAAGTATTCGTGATTACATGTGTATTGGCAGTCTCTGTGGATCCACTCTTCTTTTACATCCCAATGATTAATGGAGAGAAAAAGTGCCTTGAATTGCATGAACCATTGCAGACCACTGTTTGTGTTCTTCGTACATTCTTTGATCTTTTCTATGTTCTTCACATAATCTTCCAGTTTAAAACTGGGTTCATTGCTCCTTCTTCTCGACGAGTATTTGGAAGGGGTGAGCTAATTGATGATCCTCTGGCTATAATCAAAAGATACCTGTGTTCCCACTTCATCATTGACATCCTATCAATCATTCCTATACCACAGGTGGTCGTTTTGTTCATTATTCCAAAGCTAAAAGAGGGATCACTTCCTTTTGTGGCAAAAGAGTTATTGAAGTATGTAATATTAGTTCAGTATGTGCCAAGACTTGTAAGGATCATTCCATTATTCAAAGAAGTTACTAGAACTTCAGGCATATTGACTGAGACTGCATGGGCTGGAGCTGTGTTTAATCTTTTTGTCTATATGCTAGGAAGTCACGTCGTCGGAGCTTTCTGGTACCTGTTTTCTGTGGAAACAGGGATTCGGTGCTGGCGTAGAAATTTGAGGCTTGCTAACATGTCTGACAAATTACACTTGAGCTGTGTAAATGTCATCCCTAAATCCCTCGAAGTTATAAACAGAAATTGCACTCTCACTGATCCTGATGATATTAAAGATTCAGCAAACTTCAATTTCGGGATATTCATAGACGCTCTAACATCTCAAGTTGTAGAATCATCAAAACCTTTCGCTGAGAAGTTCTTTTACTGCTTTTGGTGGGGTCTGCGCAATGTTAGTTCTGTTGGTCAAAACCTCAAGACAAGTACATTTGTTTGGGAGATACTCTTTGCCATTTCCATTGCCATCTTGGGGCTAGTTTTATTCGCATCACTCATTGGAAACATGCAGAAATATCTGCAATCTACAGCAGTGAGAGTTGAAGAAATGAGAGTGAAAAGGCAAGATGCAGAGCAGTGGATGTCCCACCGCATGCTACCTGATAGCTTGAAGGACAGAATCAGACGGTATGAACATTACAAATGGCAACAGAATAGGGGTGTTGAGGAGGAAACATTAATTCGCAACCTTCCTAAAGATCTCAGAAGGGATATAAAGCGTCATCTTTGCTTGAATTTGCTTAAAAAAgtGCCTATGTTTgagaaaatggatgaacagTTGTTGGATGCTTTTGTTACTTCCCAATTTCGACGTCTCCACAGCAAGCAGCTTCAGCACACTTTCAGATTCTATTCTGTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGTCGCTattgtaaaaagaaagttgagaGATCATTACGTGAAGCAGAAGATAGGCTGCAAGATGCTTTGGCAAATGAAGAAGATGAGCACACGCCAAGTCTTGGTGCCACAATATTTGCATCAAGGTTTGCTGCCAATGCAATGCGAAACCTGCGACAGAATGGAGAGCGCAGGAACAGATTCCCTCAGAGAATGCTGCCTCTGCTACCTCAGAAACCAGCTGAGCCTGATTTCAGTGCTTA 1865 0.4059 MYAKGPKFVRFADSSPESSFSIEQQNSSNGYEGGRKLRTSVSSVLKSIRRRIESGSENIRSFRKSSAVHPGNDGPPKKGASGRKIFDPQGSVLQKWNKVFVITCVLAVSVDPLFFYIPMINGEKKCLELHEPLQTTVCVLRTFFDLFYVLHIIFQFKTGFIAPSSRRVFGRGELIDDPLAIIKRYLCSHFIIDILSIIPIPQVVVLFIIPKLKEGSLPFVAKELLKYVILVQYVPRLVRIIPLFKEVTRTSGILTETAWAGAVFNLFVYMLGSHVVGAFWYLFSVETGIRCWRRNLRLANMSDKLHLSCVNVIPKSLEVINRNCTLTDPDDIKDSANFNFGIFIDALTSQVVESSKPFAEKFFYCFWWGLRNVSSVGQNLKTSTFVWEILFAISIAILGLVLFASLIGNMQKYLQSTAVRVEEMRVKRQDAEQWMSHRMLPDSLKDRIRRYEHYKWQQNRGVEEETLIRNLPKDLRRDIKRHLCLNLLKKVPMFEKMDEQLLDAFVTSQFRRLHSKQLQHTFRFYSVQWRTWGACFIQAAWRRYCKKKVERSLREAEDRLQDALANEEDEHTPSLGATIFASRFAANAMRNLRQNGERRNRFPQRMLPLLPQKPAEPDFSA 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01917 621 Coils Coil 546 570 - -
Bva08g01917 621 Gene3D - 98 417 - -
Bva08g01917 621 Pfam Ion transport protein 96 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva08g01917 621 MobiDBLite consensus disorder prediction 62 82 - -
Bva08g01917 621 MobiDBLite consensus disorder prediction 594 621 - -
Bva08g01917 621 SUPERFAMILY cAMP-binding domain-like 422 511 IPR018490 -
Bva08g01917 621 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 505 621 - -
Bva08g01917 621 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 505 - -
Bva08g01917 621 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 505 621 - -
Bva08g01917 621 MobiDBLite consensus disorder prediction 14 35 - -
Bva08g01917 621 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 505 - -
Bva08g01917 621 MobiDBLite consensus disorder prediction 12 35 - -
Bva08g01917 621 Gene3D Helix hairpin bin 420 484 - -
Bva08g01917 621 SUPERFAMILY Voltage-gated potassium channels 87 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01917 Bva-Chr8 12878937 12883969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01917 505 621 Ion Channels AT5G53130 69.492 9.26e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01917 K05391 - gmx:100797784 701.434