LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01908	ATGGCGAGAGTTAAGCATACTCCCGTTGCTAGCGGACGCCCTAGGAGAGTGGCGAGATCAGCACCACCAGAAACGCCACCTCCTAATGGCGGAAGCAGGGAAGCAGAGGAACCACAAAcCGCAGGGACTCAGGGACAGAGAAAAAAGAGGCGTGCTAGACCAGGAACAAAGGCTCTTCGTGAGATTCGCCATTTTCAGAGGACTTTCAATCTACTTATCCCAGCTGCTCCTTTTATAAGATGTGTCAAGCAGATTACACACCAATTATCCAATGAGGTCAGTCACTGGTCAGCTGAAGCCCTAGTGGCACTACAGGAGGCTGCAGAGGATTATATGGTTCTTTTGTTCGAAGATTCAATGCTGTGTGCTGTTCATGCAAAGCGTGTTACTCTTAtGAAAAGAGATTTTGAGTTGGCTCGTAGGCTTGGAGGAAAAGGAAGGCCTTGCCATTGCTGGAAATTAGCTATGGACAAACACTTGCACAAACGGCGCAGAAAGCAAGCTAAGAATAGTAGCTGTGACTCTGAAGAAGTGAGCAGCATTGAGTGGGAGTTCATTAAAATGACGGATCAAGAAGAAGATCTTATTCACAGAATGTACAAACTGGTTGGTGACAGGTGGGCTCTGATAGCTGGGCGAATTCCAGGTCGAACAGCTGAGGAGGTGGAAAGGTATTGGATAATGAGACATGGAGACTTGTTTGCCAgcaaaagagaaacaagatCAGATTA	731	0.4596	MARVKHTPVASGRPRRVARSAPPETPPPNGGSREAEEPQTAGTQGQRKKRRARPGTKALREIRHFQRTFNLLIPAAPFIRCVKQITHQLSNEVSHWSAEALVALQEAAEDYMVLLFEDSMLCAVHAKRVTLMKRDFELARRLGGKGRPCHCWKLAMDKHLHKRRRKQAKNSSCDSEEVSSIEWEFIKMTDQEEDLIHRMYKLVGDRWALIAGRIPGRTAEEVERYWIMRHGDLFASKRETRSD	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g01908	243	CDD	SANT	187	226	IPR001005	-
	Bva08g01908	243	Pfam	Myb-like DNA-binding domain	188	227	IPR001005	-
	Bva08g01908	243	PANTHER	HISTONE H3-LIKE CENTROMERIC PROTEIN HTR12	19	148	-	-
	Bva08g01908	243	Pfam	Core histone H2A/H2B/H3/H4	33	142	IPR007125	GO:0003677
	Bva08g01908	243	Gene3D	Histone, subunit A	11	146	IPR009072	GO:0046982
	Bva08g01908	243	SMART	h35	44	147	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PRINTS	Histone H3 signature	68	85	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PRINTS	Histone H3 signature	109	125	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PRINTS	Histone H3 signature	44	65	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PRINTS	Histone H3 signature	125	146	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PRINTS	Histone H3 signature	13	27	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	PANTHER	HISTONE H3	19	148	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Bva08g01908	243	MobiDBLite	consensus disorder prediction	1	56	-	-
	Bva08g01908	243	ProSiteProfiles	Myb-like domain profile.	189	226	IPR001005	-
	Bva08g01908	243	SUPERFAMILY	Homeodomain-like	189	232	IPR009057	-
	Bva08g01908	243	SUPERFAMILY	Histone-fold	13	143	IPR009072	GO:0046982
	Bva08g01908	243	SMART	sant	184	232	IPR001005	-
	Bva08g01908	243	Gene3D	-	188	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01908	Bva-Chr8	12821387	12827429	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g01908	188	226	MYB Transcription Factor Family	AT5G52600	66.667	1.76e-12	62.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Bva08g01908		Histone	1.4e-32	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01908	K11253		-	jre:108996428	178.333

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g01908	08	12821387	12827429	Bva08g01908	08	12821387	12827429	ECH