Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01894 atgatgaaagaaaccAGTTTCTCCATGATGAAGCAAACCGGGTTCTCCGAGAAGGTAACCGGATTCTCTGAGCAGAGAATTGTGACAAACAAGCTAGTGAAATCGGGATTTTCCGGTGAAGTTCCAAAAGTTATTCGGGTTTCTGTAACTGACAACTACGTGACAGACTCTTCCAGTGAGGAAGATGATGCTGAAAGGCGAAGACAactcagaagaaaaaaatttgtgaatgAGATCAGAATCAACAAATCTTCCAATTTCATGGTGCACAGACACTCCCATGGAGTTGATAATAGCCCAGTGTTATccaagaaacagagaaagcaAGACAGGAACTTTTCTTCTGCAGAACCGCTTAAGAAGTTTCGTGGCGTCCGGCAACGACGGTGGGGGCGGTGGGCTGCTGAGATCAGAGATCCCAACAAGCGTACCAGACTCTGGCTGGGGACCTTCGACACTGCCGAGGAAGCAGCAGCTGTGTATGACAAAGCAGCAATTAGGCTCCGAGGTCCAAATGCTCTCACCAATTTCTCTAAACCTGCTGAAAAATCACCACCAGTTCgagaaagtatatattttgatgCTGATGATTATGGCCATTGTGAGTTCAAACAAAGTCCCAAGAGGCATTGTGAATTCCAACATAAGGTTATGTCACCCGTCAGGTTGAGTCCTGACTATGATTCAGGGAAAGAGTACCGAGATTTTCCCTCACCCATCTCTGTTCTGAGATTTCAGCCTGTAGAAAACACAGCAGAGTTGTCTGGATCAGGGTGGCCTACCATTCAAGAGCCAGAAGAACGAGAAGAAACATTTTTGCAAgttgataatttttcatttttggattCACCATTGCTCCATCTTTATTGGGATTGTCATGAAGTTAAGCCAGCAACATTTTTCGATTTCTCGGAAGAAACCTTTGTAACCCACCAGTTAATTTCCAATTACAATTATGAAGATATTCCCTTCCATATTGATGATGATTTTGAGTCCTGTAAATGGGATTTCGATAGTTATTTTCCGGATCCTTTGTCTTTGCAATG 1046 0.4015 MMKETSFSMMKQTGFSEKVTGFSEQRIVTNKLVKSGFSGEVPKVIRVSVTDNYVTDSSSEEDDAERRRQLRRKKFVNEIRINKSSNFMVHRHSHGVDNSPVLSKKQRKQDRNFSSAEPLKKFRGVRQRRWGRWAAEIRDPNKRTRLWLGTFDTAEEAAAVYDKAAIRLRGPNALTNFSKPAEKSPPVRESIYFDADDYGHCEFKQSPKRHCEFQHKVMSPVRLSPDYDSGKEYRDFPSPISVLRFQPVENTAELSGSGWPTIQEPEEREETFLQVDNFSFLDSPLLHLYWDCHEVKPATFFDFSEETFVTHQLISNYNYEDIPFHIDDDFESCKWDFDSYFPDPLSLQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01894 348 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Bva08g01894 348 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 343 - -
Bva08g01894 348 CDD AP2 120 177 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 MobiDBLite consensus disorder prediction 91 118 - -
Bva08g01894 348 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Bva08g01894 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 20 343 - -
Bva08g01894 348 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Bva08g01894 348 MobiDBLite consensus disorder prediction 97 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01894 Bva-Chr8 12740956 12742002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01894 22 337 AP2-EREBP Transcription Factor Family AT3G61630 36.795 2.10e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva08g01894 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01894 - - gmx:102669451 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01894 08 12740956 12742002 Bva08g01894 08 12740956 12742002 ECH
Bva02g01998 02 21077785 21079029 Bva08g01894 08 12740956 12742002 ECH