Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01868 ATGTCCTCTCCCGCCGCCGCCATCTCCGCCACTACCTCCTATGTCAACAACATCGGCCTCGGCTACTCCATCGCTATCACCCTTGGCTTCCTTGTACTTCTCTCCGCCCTCATCCTCTCCTCCTACCTCTGCTGCCGCGCCTCTCGTTCCCGCTCTCGGGCCCATAACCCTAACCCGAACTCTGATGGCATCGTTCTTCCCCGCATAATCTTCGTCGCTGAGGACGATGGAAACGGGCATGATGAAAACGTAGTCGTGGGGCTTGATCAAAAAATCATCAACTCCTACCCGAAATTTCAGTTCAGCAAGGATTCTGTGGGTGGTGGCGCTACCAGCAATGACACGACGTGTTCGATCTGTTTGTGTGAGTATAAGGAGGTCGAGATGCTGAGGATGATGCCGGAGTGCCGCCATATTTTTCACCTTTGTTGCCTCGATTCCTGGCTGAAGCTTAACGGGTCGTGTCCTGTTTGCCGGAACTCACCGCTTCCGACGCCTTTGTCGACGCCCCTGCAGGAAGTGGTGCCACTGTCTCAATACGCGGCTGATCGGAGACGAAGGATGTA 566 0.5512 MSSPAAAISATTSYVNNIGLGYSIAITLGFLVLLSALILSSYLCCRASRSRSRAHNPNPNSDGIVLPRIIFVAEDDGNGHDENVVVGLDQKIINSYPKFQFSKDSVGGGATSNDTTCSICLCEYKEVEMLRMMPECRHIFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRRM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01868 188 CDD RING-H2_PA-TM-RING 116 159 - -
Bva08g01868 188 Pfam Ring finger domain 116 159 IPR001841 -
Bva08g01868 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 163 IPR013083 -
Bva08g01868 188 PANTHER RING-H2 FINGER PROTEIN ATL67 10 187 - -
Bva08g01868 188 SMART ring_2 117 158 IPR001841 -
Bva08g01868 188 SUPERFAMILY RING/U-box 110 164 - -
Bva08g01868 188 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Bva08g01868 188 PANTHER RING-H2 FINGER PROTEIN ATL67 10 187 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01868 Bva-Chr8 12612481 12613047 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01868 19 179 C3H Transcription Factor Family AT5G06490 38.235 8.09e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01868 - - pvy:116141324 254.988