Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01861 ATGGTTATGGAGGATGATTGGGATCTGCACGCTGTGGTCAGAGGCTGTGCTAccatcaccaccaccacctgCTCCCCCTCTTCCTCCACCGTCACCACCGCCACCAACACCACTTCGTGTTCTGTATCTTCCTCTGGTTTTGGTGCTTTTTATCAgcctgctgctgctgcttccTACGGCTTCCCTGTTTTTGGTAGTGAACATGGAGGCCAAGTTCTGACGCTTTCAGACCCCTTTGAGGAAAGAAGTTCCATTGAGGAATTGCATGAGCTTTATAAGCCTTTCTTCCCCAAATCACACGCTCCCTCTTTGCAAGCTACTCCACACTCtcctctttcttccttctctgtTTCCTCCGCACCTAAAGCTTCTCAAATGCAGCAAAAACATCAGCAGCCTGGGAAGCAGTCTCATGCAGGGTCTGCCACCACTCAGAGATCAAAAAGAAGAAAGAACCAGCTCAAGAAAGTGTGTCAAGTTCCTGCTGAGGCCCTCTCTTCTGACATATGGGCATGGAGGAAATATGGCCAAAAACCCATTAAAGGCTCTCCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGTTGCTTGGCTCGGAAACAGGTGGAGAGGAATAGATCCGACCCAACAATGTTCATAGTCACCTATACGGGGGAGCACAATCATCCTGCCCCTACTCATCGGAATTCTCTTGCTGGCTCTACCCGCCAGAAGCCCTTAACCACTCAAGTAGCCACAGCTGGAGACTCTGAAAACCCCCCGACAAAACCCATATCTCCGGCGAGCTCCGGGGTGGAGGAGGAGGTTGCAGTTCAGAGTGCAAAGTCAGACAGCAAGGAAGAGAAGGAGGATTTagttgatgatgaagaaggtGAATTTGGGATATCAGATATGCTCCTAGCAGATGACTTCTTTGAAGGGTTAGACGAATTAACAAGGTCATCGCCACCACAGCCGCCGGTGGCCGGAGACTGCTTCATTGACACTTTTTCAGCTGGAATTACTCTGCCTGTTTGGGTAGCCAATAATGCTGCAGCTGCCGCTGGTGGTAGCTG 1061 0.4637 MVMEDDWDLHAVVRGCATITTTTCSPSSSTVTTATNTTSCSVSSSGFGAFYQPAAAASYGFPVFGSEHGGQVLTLSDPFEERSSIEELHELYKPFFPKSHAPSLQATPHSPLSSFSVSSAPKASQMQQKHQQPGKQSHAGSATTQRSKRRKNQLKKVCQVPAEALSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTGEHNHPAPTHRNSLAGSTRQKPLTTQVATAGDSENPPTKPISPASSGVEEEVAVQSAKSDSKEEKEDLVDDEEGEFGISDMLLADDFFEGLDELTRSSPPQPPVAGDCFIDTFSAGITLPVWVANNAAAAAGGS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01861 353 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 352 - -
Bva08g01861 353 Gene3D WRKY domain 150 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva08g01861 353 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 352 IPR044810 GO:0003700
Bva08g01861 353 SUPERFAMILY WRKY DNA-binding domain 164 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva08g01861 353 MobiDBLite consensus disorder prediction 103 143 - -
Bva08g01861 353 ProSiteProfiles WRKY domain profile. 161 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva08g01861 353 MobiDBLite consensus disorder prediction 224 261 - -
Bva08g01861 353 SMART WRKY_cls 166 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva08g01861 353 MobiDBLite consensus disorder prediction 220 295 - -
Bva08g01861 353 MobiDBLite consensus disorder prediction 102 158 - -
Bva08g01861 353 Pfam WRKY DNA -binding domain 168 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01861 Bva-Chr8 12592000 12593690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01861 3 352 WRKY Transcription Factor Family AT4G01250 44.173 3.47e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva08g01861 WRKY 7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01861 K13425 - gmx:100170675 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01861 08 12592000 12593690 Bva03g01303 03 12690280 12692011 ECH
Bva08g01861 08 12592000 12593690 Bva04g01197 04 8169888 8171305 ECH
Bva08g01861 08 12592000 12593690 Bva08g01861 08 12592000 12593690 ECH
Bva08g00110 08 575041 575385 Bva08g01861 08 12592000 12593690 ECH