Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva08g01839 | ATGGGAGGTTGTTGCTGTTCTGCCAGAAAGCCTCATCTGCATGGAACGCCAGTGTATTATTATTGCCCACCAACTTTGGAAGAGCGAGAGTCTTTGACCTCCAATAATGGTACAGCTACTTCTCTCACTTCCGGATTGCTGGTAGGTTTGAATCTGGAAGCATCCATACCTGATACTTTCCAATCCCCTCCTACACCTTTGCCATATGATGTGGTCTTGGATCTTGAAGAATCAGAATGTAAAGCTCAGGATAATTCTTCACCTGTCTCTCCTAGAAATCTAGAactatcaaaatcaaatgaatcTCATGTATTAGTGACAGAAGAGGAGGATGGCTGTCCAATTTGTCTTGAAGAATATGATGCTGAGAATCCTAAAACCATGACAAAGTGTGAACACCACTTTCACCTCTCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATGAGGAGATGATATTTGAACAAACTTTGAGTTA | 494 | 0.4028 | MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNNGTATSLTSGLLVGLNLEASIPDTFQSPPTPLPYDVVLDLEESECKAQDNSSPVSPRNLELSKSNESHVLVTEEEDGCPICLEEYDAENPKTMTKCEHHFHLSCILEWMERSDSCPICDEEMIFEQTLS | 164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva08g01839 | 164 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 159 | IPR013083 | - | |
| Bva08g01839 | 164 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED | 1 | 73 | - | - | |
| Bva08g01839 | 164 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED | 74 | 163 | - | - | |
| Bva08g01839 | 164 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 74 | 163 | - | - | |
| Bva08g01839 | 164 | MobiDBLite | consensus disorder prediction | 80 | 103 | - | - | |
| Bva08g01839 | 164 | ProSiteProfiles | Zinc finger RING-type profile. | 113 | 154 | IPR001841 | - | |
| Bva08g01839 | 164 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 73 | - | - | |
| Bva08g01839 | 164 | SMART | ring_2 | 113 | 153 | IPR001841 | - | |
| Bva08g01839 | 164 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
| Bva08g01839 | 164 | Pfam | Ring finger domain | 113 | 153 | IPR001841 | - | |
| Bva08g01839 | 164 | SUPERFAMILY | RING/U-box | 107 | 159 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva08g01839 | Bva-Chr8 | 12420771 | 12422588 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva08g01839 | 1 | 164 | C3H Transcription Factor Family | AT4G00335 | 49.738 | 3.88e-61 | 186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva08g01839 | - | - | adu:107472508 | 289.271 |