Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01836 ATGGCAGGGTGGTCGCAGCTTGATGATGGGTCTACTTTAGATTTTGTTGTAACCCCTAGCAAGTTTAAAGCAGAAGGATTCTTCGTGGATCTCAGGCCGGTTTCAGAAGGTGGTCTTGTGAGAGTTGAAGCGAGCCCGGATAATACTTCGATTGAATGTGTTCTTAGTGGTTTTTCCGATAAGCTTCAATGCCGTTTTGATCATTTTCTTCGGGGGGCTTTAGAGGAGATCTGcagcaaaaaatattatcGGCCTATACCTCCAATGCTTGGAAATGGGCAACAAGTGAATTTACAGAAGCTCTTCGTGGTTGTGAAGCAGAAAGGTGGGTATGATGCTGTCTCGGAGAACCGTTTGTGGGATTTAGTGGCCCTGGAATCTGGGTTGGGTGTGAATGTCGGTTCTTCTGTGAAGTTGATTTACTGTAAGTACTTGAATACTTTAGACTCATGCCTGAAAAGAGCTGCTAACAGCAAGGTTTGTGATGCTGTTTTGAGCGATATTGGAGCTGAATTCAGTAGGCGTCTGATGGAGTTGCAAACCGGAGTTGAAGGCCTCTTGTCAGAATTTCCGGATCGAGAGAGTGATGATAAGTGTCGACGCTTGGATTTCAAGCGTAAATTAGACTACAACGATGTGGAGATTTTGTGTGACACTAAAAAGTTAAAGAGTATGATTGTGGATGCTGATAAGGACAAAAAAGTTCTGGGTGTGAGACAGCTTGATTTGGATATGCCAGACTGTAGGACGAATGAACCAAGAGTAGGGAACTTGTGCAACAATACTGGCtcaatgaaaatattgcaAGAGTTTGATGGAGGCAAGATATCTATTGATAGCGATGAAGTTGTATGTCTAGATAATGCAACGAAGGTCTCAGTGAATGTACCAAAGATTGGTGATCTGTGCAATAGTAATGAGATGAACAACACATTTGGGTTCTCTGGTGAAGGCAAGGGATGTAGCAGCAATGATGATGTCTTGATATTGGATCCATCCAGTATCAATAAAGAGAGCTTCGGTCATAAGAGGAAGACAGGGCCTATGTGGGAAATGCTAAATTGGGTTGCTGGCATTGCGAAGAATCCTTGTGATCCTTCATCTGGTTCAATACCTGAAAGGTCGAAGTGGAAGTCTCACAGTAATGAGGACACATGGAAGAAGGTCTTGTTGATTCGAGAGGCTGTATTTCTGAAAAGGCATGCTGAGTCAAGCGATGAACAACTTATTTGGCAGAGTCAGAAGATGCACCCTTGCTTGTATGATGATCAACTCGGGACAGCTTACAATCTTAGAGAGAGGTTGAAGAATGATAAGAGGCCTATATCTGGAAAATCTACTTGCACAGATTCGTCCTTAGAAACCCAAGCTGATTTGGAGAGATCTCCAAGTCCTTGCATTGAGTTTTATTGTGACAAATTCCCCAGAATGCCCATTCCTCTGGGGCCTGGTTTTCAAGCTCAACTACCAGAATGGACTAGCGTGGCTTCTGAAAGTGATCCTATTTGGTTGGGGACCCCAATATGGCCATCAAAAAATGCAAACAACAAACTTCTCATTGAGAGGGATCCCATTGGAAAGGGAAGACAAGATTCATGTGGCTGCCACGAACCAGGTTCTGTTGAGTGTGTCAGATTTCACATCGCCGAGAAAAGGGCTAAACTTAAGCTGGAATTGGGTTTTACTTTTCTTGAGTGGAATTTAGATAGGGTGGGTGAAGAAGTTAGGCGATTGTGGACTcaggaagaagagaagaagttCAAGGATATTGTGCAATCAAACCCTGCATCAACAGAAAGGAGTTTCTGGGATTACATTTTTAGATCATTTCCTACCAAGACGAGGGAAGATTTAGTTAGCTACTACTTCAATGTCTTTCTTTTGCTGCGCAGAGGACACCAGAATAGGCATACTCCAGATGACATTGACAGTGATGATGATGGATCAGAATCTGGAccaatgaaaaatgtttttggaCATCAAGCAGAAAATTCACGCAGACCCACCTTATTAACCCCCAAAAAGCCGCAGAGAAACTGCCGATA 2045 0.42 MAGWSQLDDGSTLDFVVTPSKFKAEGFFVDLRPVSEGGLVRVEASPDNTSIECVLSGFSDKLQCRFDHFLRGALEEICSKKYYRPIPPMLGNGQQVNLQKLFVVVKQKGGYDAVSENRLWDLVALESGLGVNVGSSVKLIYCKYLNTLDSCLKRAANSKVCDAVLSDIGAEFSRRLMELQTGVEGLLSEFPDRESDDKCRRLDFKRKLDYNDVEILCDTKKLKSMIVDADKDKKVLGVRQLDLDMPDCRTNEPRVGNLCNNTGSMKILQEFDGGKISIDSDEVVCLDNATKVSVNVPKIGDLCNSNEMNNTFGFSGEGKGCSSNDDVLILDPSSINKESFGHKRKTGPMWEMLNWVAGIAKNPCDPSSGSIPERSKWKSHSNEDTWKKVLLIREAVFLKRHAESSDEQLIWQSQKMHPCLYDDQLGTAYNLRERLKNDKRPISGKSTCTDSSLETQADLERSPSPCIEFYCDKFPRMPIPLGPGFQAQLPEWTSVASESDPIWLGTPIWPSKNANNKLLIERDPIGKGRQDSCGCHEPGSVECVRFHIAEKRAKLKLELGFTFLEWNLDRVGEEVRRLWTQEEEKKFKDIVQSNPASTERSFWDYIFRSFPTKTREDLVSYYFNVFLLLRRGHQNRHTPDDIDSDDDGSESGPMKNVFGHQAENSRRPTLLTPKKPQRNCR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01836 681 ProSiteProfiles ARID domain profile. 60 153 IPR001606 GO:0003677
Bva08g01836 681 Pfam Myb-like DNA-binding domain 578 625 IPR001005 -
Bva08g01836 681 SMART bright_3 61 154 IPR001606 GO:0003677
Bva08g01836 681 MobiDBLite consensus disorder prediction 637 681 - -
Bva08g01836 681 SUPERFAMILY Homeodomain-like 578 626 IPR009057 -
Bva08g01836 681 CDD SANT 579 626 IPR001005 -
Bva08g01836 681 CDD ARID 65 145 - -
Bva08g01836 681 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 85 680 - -
Bva08g01836 681 SUPERFAMILY ARID-like 63 155 IPR036431 GO:0003677
Bva08g01836 681 MobiDBLite consensus disorder prediction 662 681 - -
Bva08g01836 681 Gene3D - 61 164 IPR036431 GO:0003677
Bva08g01836 681 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 85 680 - -
Bva08g01836 681 Pfam ARID/BRIGHT DNA binding domain 74 146 IPR001606 GO:0003677
Bva08g01836 681 SMART ARID_2 57 149 - -
Bva08g01836 681 SMART sant 575 628 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01836 Bva-Chr8 12401998 12405712 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva08g01836 ARID 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01836 - - gmx:100779445 572.778