Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01834 ATGCAATCTGCTGGCGGTGGGGGTGGGCCCGGTCGGAACCCGGGTGTGGGGCCGGCAGGGCGGGCTACATCAACATCTTCAGCTGCGTCACCAGCTTCTTCTTCGTCGTCGCACTTGGGGTTAGACTCGttacagcagcagcagcagcaaataGCAGGTTCTAGACAGTCATTGCAACAGCAACTACTTAGAAAACCTGAAGGGAATGAAGCGTTTTTAGCATATCAAGCTGGGCTTCAAGGGGTATTAGGGAGCAACAATTTCTCGTCTCCTGCTGCTATGCAACTGCCACAACAGTCACGAAAATTCATTGATTTAGGTCCACATGGTTCAAGCCAGGAGGTCCAGCTTAGGGGTCAAGGTGGTGAGCAACAAATGCTAAATCCTGTACAGCAGGCATACATGCAGTATGCTTTGCAAGCTCAACAAAAGTCTGCTATGGCAATGCAATCACAGCAGCAAACTAAAATGGGAATGTTAGGCTCTTCATCTGGGAAGGATCAGGAAGTGCGAATGGGAAACTTGAAAATGCAGGACCTTATGTCTATGCAGGCAGTGAATCAAGCTCAAGCATCAACGTCGCGAAATTCATCCGAACATTTTTCTCGTGGGGAAAAGCAGATTGAGCAAGGACAGCAGCTAGTGCCTGATCAGAAGGGTGATGGGAAGCCTTCAACCCAGGGGCTGGCCATTGGACACTTAATGCATGGAAATATGATAAGACCTGCACAAACTCCAGCGACTCAGCAGGGCGTCCAAAATGTTGTGAACAACCCGATTCCGGTGTCTGCTCAATTGCATGCTATGCAGGCATGGGCTCATGAACGTAATATAGACCTGTCTCATCCTGCAAATGCTAACTTAATGGCACAGCTAATTCCACTGATGCAATCAAGGATGGTTCCGCAGCAAAAGGCAAATGACAACAATGTTGGCGCTCACTCATCACCAGTCTCTGTTTCAAAGCAGCAGGTTACTTCTCCAGCGGTTGTAAGTGAGAATTCAGCACATGCTAATTCATCAAGTGATGTGTCTGGGCAATCAGGTTCTGCAAAGGCCCGGCAGACAGTTCCACCAAGCCATTTTGGCCCACCAACAAATATTGGTATGGCCAGTAATGCCAGTGACATGTCAGCGCAGCAGTTTAGTGTTCATGGCAGAGAGTCTCAAGCACACCTGAGGCCGCCAGTAGTTGGAAATGGAATGCCTCCTATGCATCCCCAACAGTCTTCTGGTAATGCAAACCTAGGTGCAGAACCTCCGCAAATGCATTATATCAGACAGTTAAAACAACCTTCTCCTCAGTCTGCTGGTCCATCAAGTGAAGGAGGTTCAGGAAATCATGTCAAATCCCAAATGGTACCAGCTCAGATGCCTCAACAACTTGGATTTACTAAACAGCAATTGCATGTTCTTAAAGCACAGATACTAGCATTCAGGCGGCTTAAGAAAGGTGAAGGTACACTCCCACAAGAACTTCTTCGAGCTATTGCTCCACCACCTCTTGAATTGCAAGTGCAGCAGCAGAGTCATCCTGcaggagaaaaaaatcaagataaaTCTGTTGCAAATATTGTTCCGGAACAACCAAGGCAGATTGATTCTATGGCAAAGGATTCACAATCTTTCCCAGCAACtaatggaccaagttcatcgAAGCAGGAAACCTTTGCCAGAGATGATAAAGCCACTGTAACAGCAGGTCATACACAAGCTATGCCAACTGTGACAAAGGAATCTGCGCCAACCTTACCTGCTGGAAAGGAAGATCAGCAATCAATTGGATCCTCTGTTAAGCCAGACCAGGAAAATGAGCGTGGAGTCAACAGAACTCCTGTACGAAATGAGTTGCCATTAGATAGGGGAAAGGCTATTGCACCTCAGGCCCCTGTATCTGATGCAATGCAAACTAAGAAACCTACACAAGTAAGCACTGTTGCCCCATCGAAGGATATGGCCTTAACCAGAAAATATCATGGACCTCTATTTGATTTCCCCTTCTTCACCAGGAAACCAGAATCCTTTGGGTCATCGTTgatgttaaataataataatttatcactGGCATATGATGTTAAAGATCTTCTCTTTGAGGAGGGTATGGAAGTTCTGAACAAGAAAAggactaaaaatttaaagaagatTGAAGGTTTATTGGCTGTAAActtagagagaaaaaggatTAGGCCAGATCTGGTCTTGAAGTTgcaaattgaagagaaaaaacttCGCCTTTTAAATCTTCAGGCCCGTTTAAGGGATGAGATTGATCAACAACAGCAAGAAATAATGGCAATGCCAGACAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAGCGCCAACGTCTAGAACTATCTAGACAAATGCAGGCCTCACAGAGGGCTTTAAGGGAGAAGCAACTCAAGTCTACATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCCATTCGTGATGCTCGAACTGCCCGGAATAGAGGGGTAGCCAAATATCATGAGAGAATGTTGAGGGAGTTCTCAAAACGTAAAGATGATGACAGGAACAAAAGGATGGAAGCCCTAAAAAACAATGATGTTGACAGATATAGGGAGATGCTACTGGAACAGCAGACTAGCATTCCAGGAGATGCTGCAGAGAGATATGCTgttctttcatctttcttaACCCAAACTGAAGAGTATCTTCATAAATTGGGAAGTAAGATAACAGCTGCCAAAAACCAACAGGAAATGGAGGAGGCAGCAAGAGCTGCAGCAACTGCTGCACGGTTGCAGGGTCTCTCTGAAGAAGAAGTTAGAGCTGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCATTTTATGGAGATGAATGCCCCTAAAGACAGTTCATCTGTCCGcaaGTATTACAGCCTTGCTCATGCTGTGAATGAAAAGGTCGTTAGACAACCATCTACTTTACGGGCTGGAACTTTGAGAGACTATCAGCTTGTTGGCTTGCAATGGATGCTTTCTTTGtataacaacaaattaaatggAATTTTGGCAGATGAGATGGGTCTTGGTAAAACTGTTCAGGTTATGGCATTGATAGCCTACTTGATGGAATTTAAAGGAAACTATGGTCCACATCTTATTATAGTCCCCAATGCTGTTTTGGTTAATTGGAAGAGTGAGTTACATACGTGGTTACCATCTGTGTCATGCATCTTTTATGTTGGAGGGAAGGATCAAaggtcaaaattattttctcaaGAGGTTTCTGCTATGAAGTTTAATGTCCTTGTGACAACTTATGAGTTTATCATGTATGACCGGTCAAAACTTTCTAAAATTGATTggaaatatatcataattgaTGAAGCACAGAGGATGAAGGATAGGGATTCAGTTCTAGCCCGTGATCTTGATAGATATCGTTGTCAGAGACGCCTACTTCTGACAGGAACTCCATTACAGAATGATTTGAAGGAACTCTGGTcccttttaaatttacttCTTCCTGAGGTTTTTGACAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAGGGAAGGTCCTACTCAAAATGCAGAGGATGATTGgcttgagagagagaagaaggtTATCATTATTCACCGACTTCATCAAATTCTTGAGCCTTTCATGCTCAGACGTCGCGTTGAAGATGTTGAAGGCTCACTACCTCCAAAGGTCTCCATAGTTTTGAGATGTCGAATGTCTGCTTTCCAGAGCTCCATATATGACTGGGTGAAGTCTACTGGTACACTTCGTCTTGACCCTGAGGATGAGAAGCGTAGGGTTGAAAAGAATCCAGTATACCAGGTCAAGcaatataaaactttaaacaacAGATGTATGGAGCTGCGTAAAACTTGCAATCATCCATTGCTTAATTACCCATACTTCACTGATTTGTCCAAGGACTTCCTTATCAGATCCTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAACTTCAGAGAACCGGACATCGTGTTCTACTCTTCAGTACTATGACTAAACTTCTAGACATATTGGAAGAATACCTGCAATGGAGACGACTTGTGTACAGAAGAATTGATGGGACAACGAGTTTGGAAGACCGTGAATCAGCTATAGTTGACTTCAATGGTGCAGATTCAGACTCTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGACGGGGCCTTAACCTGCAGTCTGCTGACACAGTTATCATATATGATCCTGATCCAAACCCCAAAAATGAGGAACAGGCAGTTGCCAGAGCCCATCGCATTGGACAGACAAGAGAAGTCAAAGTTATCTACATGGAAGCAGTTGTTGGCAAGATCTCTAGCCATCAGAAAGAGGATGAACTGAGAAGTGGGGGCATTGTTGATTTGGAGGATGAACTCGCTGGTAAGGATCGCTATATGGGATCCATTGAGAGTCTCATAAGGAACAATAttcaacaatataaaatagacATGGCTGATGAGGTAATCAATGCTGGACGTTTTGACCAAAGAACAACACATGAAGAGAGGCGCATGACTTTGGAGACATTATTACATGATGAGGAAAGGTATCAAGAAACCGTCCATGATGTTCCCTCGCTACAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAGGTTGTCCTGTTTGACCAAATGGATGAAGAATTGGATTGGACTGAGGAGATGACACAGCATGATCAGGTGCCTAAATGGCTTCGAGCGAGCACCAGAGAGGTGAATGCCACGATTGCTGCTTTATCAAAAAGACCATCAAAGAACATGCTCTTCGGCAGTAATATTGGTGGGGAATCCAGTGAAATTGGTTCAGCTGAAAGGAGAAGGGGAAGGCCTAAGGGGAAAAAGCCTCCTAGTTATAGAGAGTtagaagatgaaaatggagaatACTCTGAAGCAAGTTCTGAAGAGAGAAATGGATATTCTGCACATGAAGAAGAAGGGGAAATAGGAGAATTTGAAGAGGATGGGTATAGTGGGGCTGATGGGGCACAACCGATAGACAAAGATCAATTGGATGAGGATGTGCCGCTTTGTGATGGTGGATATGAATTTCCTCGGTCTTCTGAAAATACTAGAAATAATCAAATGGTTGAGGAAGCTGATACTTCAGGATCGTCCTCTGACAGTCGAAGATTGACACAGACGGTATCTCCTTCAGTTTCTTCTCAGAAATTTGGTTTCCTTTCTGCATTGGATGCGAGGCCAGGCTCAGTAGCAAAAAGGATGACAGATGAATTAGAGGAAGGGGAAATTGCTGTATCTGGTGATTCTCACGTGGATCACCAACAATCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAAGATGAACAGGTTTTGCAACCTAAGATAAAGCGGAAGCGTAGTCTTCGTGTTCGACCCCGTAATGCCATGGAAAGACCTGAGGAAAAGTCAGGCAGTGAGATGGCATCTCTTCAACGCAGAGAATCATCTCCTTTGACTGTCCAAGCAGACCAGAGGTATCTAGGGCAATCAAGGACTGATTCAGAACCAAAACCATTTGTTGACTCCAATTCTGGCAGGCATGATCAGATTGAGccaatgttaaaaaataagcgAACTTTACCTTCAAGGAAGATAGCTAATGCATCCAAATTACATAGCTCACCTAAGCCTAGTCGATTGAATTGCATTTCTGCTCCGTCAGAGGATGGTGAACACTCTAGAGAAAGTTGGGAGCAGAAGCCTATAAATTCAAGTGGATCTTCAGCTTTTGGTACTAAAATGCCTGAAATCATCCAGAGAAGGTGCAAGAATGTAATTAACAAACTTCAAAGGAGAATAGACAAGGAAGGTCATCAAATTGTACCTCTAGTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGATACAGTGGTGGATCTGGGAATAGCTTGTTGGATTTACGAAAGATTGACCAGCGAATTGATAGATTAGAGTATAATGGGGTAATGGAGCTTGTGTACGATGTGCAGTTCATGTTGAAGGGTGCAATGCAATTTTATGGGTTCTCATATGAGGTAAGAATTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGACCTCCTGAAAATTGCATTTCCTGATACGGACTTCCGAGAGGCAAGAAATGCTCTTTCTTTCTGTGGTCAAGTTTCTGCCGGTACTGTAACATCGCCAAAGCAAGGAGCAATTAGCCAGAACAAGAGGCACAAGCATATAAATGAGGTGGAAACTGATCCATGCCCTTCGCAGAAGCCACCACAACGTGGATTCCCTTCTGGGAATGAAAACACAAGGACCAAAGGCCATATTTCTCAGAAGGAATCTAGAATTGGGAGTGGCAGGGAGCAACTTCAGCAGGATGATTCTCCGGTGCTTGCTCATCCAGGTGAACTGGTGGTGtgcaagaagagaagaaatgatAGGGAGAAATCATTGAAGACTAGGACTGGCTCAGCTGGTCCGGTTTCACCACCAAGCATGGGCCCCCCAATAAGAAGTCCGGGGCCAGGCTCGGTCTCCAAGGCCGCCCACACGGCAGGGTGGTCCGGCCAGCCAGGTCAACAACCGAATGGGTCTGGTGGGTCAGTTGGGTGGGCAAACCCTGTAAAGCGATTGAGAACGGATTCCGGCAAGAGAAGACCAAGCCATCTATA 6665 0.4261 MQSAGGGGGPGRNPGVGPAGRATSTSSAASPASSSSSHLGLDSLQQQQQQIAGSRQSLQQQLLRKPEGNEAFLAYQAGLQGVLGSNNFSSPAAMQLPQQSRKFIDLGPHGSSQEVQLRGQGGEQQMLNPVQQAYMQYALQAQQKSAMAMQSQQQTKMGMLGSSSGKDQEVRMGNLKMQDLMSMQAVNQAQASTSRNSSEHFSRGEKQIEQGQQLVPDQKGDGKPSTQGLAIGHLMHGNMIRPAQTPATQQGVQNVVNNPIPVSAQLHAMQAWAHERNIDLSHPANANLMAQLIPLMQSRMVPQQKANDNNVGAHSSPVSVSKQQVTSPAVVSENSAHANSSSDVSGQSGSAKARQTVPPSHFGPPTNIGMASNASDMSAQQFSVHGRESQAHLRPPVVGNGMPPMHPQQSSGNANLGAEPPQMHYIRQLKQPSPQSAGPSSEGGSGNHVKSQMVPAQMPQQLGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLELQVQQQSHPAGEKNQDKSVANIVPEQPRQIDSMAKDSQSFPATNGPSSSKQETFARDDKATVTAGHTQAMPTVTKESAPTLPAGKEDQQSIGSSVKPDQENERGVNRTPVRNELPLDRGKAIAPQAPVSDAMQTKKPTQVSTVAPSKDMALTRKYHGPLFDFPFFTRKPESFGSSLMLNNNNLSLAYDVKDLLFEEGMEVLNKKRTKNLKKIEGLLAVNLERKRIRPDLVLKLQIEEKKLRLLNLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRLELSRQMQASQRALREKQLKSTFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEMEEAARAAATAARLQGLSEEEVRAAAACAGEEVMIRNHFMEMNAPKDSSSVRKYYSLAHAVNEKVVRQPSTLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQREGPTQNAEDDWLEREKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAFQSSIYDWVKSTGTLRLDPEDEKRRVEKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPYFTDLSKDFLIRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNGADSDSFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVGKISSHQKEDELRSGGIVDLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEVVLFDQMDEELDWTEEMTQHDQVPKWLRASTREVNATIAALSKRPSKNMLFGSNIGGESSEIGSAERRRGRPKGKKPPSYRELEDENGEYSEASSEERNGYSAHEEEGEIGEFEEDGYSGADGAQPIDKDQLDEDVPLCDGGYEFPRSSENTRNNQMVEEADTSGSSSDSRRLTQTVSPSVSSQKFGFLSALDARPGSVAKRMTDELEEGEIAVSGDSHVDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSLRVRPRNAMERPEEKSGSEMASLQRRESSPLTVQADQRYLGQSRTDSEPKPFVDSNSGRHDQIEPMLKNKRTLPSRKIANASKLHSSPKPSRLNCISAPSEDGEHSRESWEQKPINSSGSSAFGTKMPEIIQRRCKNVINKLQRRIDKEGHQIVPLVTDLWKRIENSGYSGGSGNSLLDLRKIDQRIDRLEYNGVMELVYDVQFMLKGAMQFYGFSYEVRIEARKVHDLFFDLLKIAFPDTDFREARNALSFCGQVSAGTVTSPKQGAISQNKRHKHINEVETDPCPSQKPPQRGFPSGNENTRTKGHISQKESRIGSGREQLQQDDSPVLAHPGELVVCKKRRNDREKSLKTRTGSAGPVSPPSMGPPIRSPGPGSVSKAAHTAGWSGQPGQQPNGSGGSVGWANPVKRLRTDSGKRRPSHL 2221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01834 2221 SMART QLQ_2 462 499 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1820 1850 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1747 1764 - -
Bva08g01834 2221 SMART bromo_6 1926 2037 IPR001487 GO:0005515
Bva08g01834 2221 MobiDBLite consensus disorder prediction 535 554 - -
Bva08g01834 2221 SUPERFAMILY Bromodomain 1976 2035 IPR036427 GO:0005515
Bva08g01834 2221 MobiDBLite consensus disorder prediction 188 208 - -
Bva08g01834 2221 Pfam QLQ 464 497 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva08g01834 2221 Coils Coil 738 762 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 535 648 - -
Bva08g01834 2221 Gene3D - 979 1227 IPR038718 -
Bva08g01834 2221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1558 IPR027417 -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1851 1869 - -
Bva08g01834 2221 Pfam Helicase conserved C-terminal domain 1318 1429 IPR001650 -
Bva08g01834 2221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1000 1165 IPR014001 -
Bva08g01834 2221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1319 1496 IPR001650 -
Bva08g01834 2221 ProSiteProfiles QLQ domain profile. 463 499 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva08g01834 2221 MobiDBLite consensus disorder prediction 19 60 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 2059 2221 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1695 1735 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 586 602 - -
Bva08g01834 2221 Pfam SNF2-related domain 991 1295 IPR000330 GO:0005524|GO:0140658
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1772 1793 - -
Bva08g01834 2221 PANTHER ATP-DEPENDENT HELICASE BRM 37 2148 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Bva08g01834 2221 Coils Coil 41 61 - -
Bva08g01834 2221 CDD SF2_C_SNF 1314 1439 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 2135 2151 - -
Bva08g01834 2221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1218 IPR027417 -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1595 1921 - -
Bva08g01834 2221 SMART helicmild6 1345 1429 IPR001650 -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 428 451 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1 60 - -
Bva08g01834 2221 Gene3D - 1922 2034 IPR036427 GO:0005515
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1803 1819 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 1873 1892 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 634 648 - -
Bva08g01834 2221 Gene3D - 1228 1438 IPR027417 -
Bva08g01834 2221 PANTHER SNF2/RAD54 HELICASE FAMILY 37 2148 - -
Bva08g01834 2221 SMART ultradead3 984 1173 IPR014001 -
Bva08g01834 2221 Coils Coil 782 802 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 306 387 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 306 451 - -
Bva08g01834 2221 MobiDBLite consensus disorder prediction 2181 2199 - -
Bva08g01834 2221 CDD Bromodomain 1929 2032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01834 Bva-Chr8 12384826 12396673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01834 970 1454 RAD5 or RAD16-like Gene Family AT1G02670 25.709 1.62e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva08g01834 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01834 - - gmx:100807104 3344.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01834 08 12384826 12396673 Bva08g01834 08 12384826 12396673 ECH