Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01824 ATGGAGGGGAAAGACGAGAATGTGAGGCTGAGAGCTAACAAGTTCACAGAAAGGCAACCTATTGGAACCTCAGCGCAAACCAAAGACTACAACGAGCCACCGCCAGCACCAATTTTTGAGCCTCAAGAACTTCATTTATGGTCTTTCTGGAGAGCTGGGATTGCTGAGTTCATAGCCACCTTCTTGTTCCTCTACATCACCCTTCTCACTGTAATGGGCTTTGCTAGGACCCCTAAAAAGTGTGCTTCCGTGGGCGTTCAGGGCATTGCTTGGGCCTTTGGAGGCATTATTTTTGCCCTTGTTTATTGCACTACCGGTATCTCAGGTGGTCACATAAACCCAACAGTGACATTTGGCCTTTTCCTGGCAAGGAAGCTCTCACTGACCAGGGCATTGTTCTATATGGTGATGCAATGCCTAGGTGCAATCTGTGGTGCTAGTGTTGTTAAAGGCTTTCAACCTAATCTGTATGAGAAATTGGGCAGTGGAGCAAACGTGGTAAACCATGGTTACACCAAAGGAGATGGCCTCGGTGCCGAGATTGTTGGAACCTTCCTTCTTGTCTACACAATTTTCTTTGCAACAGATGCCAAGAGGAATGCCAGAGACTCTCATGTCCCGGAAAACATGGCTAGAACTAAAAATGATGCTTATAGGCATGCTAAACCAGAAGAACAGCAAGAGGAGATCTTGGCACCTCTTCCAATTGGGTTTGCCGTGTTTCTGGTGCACTTAGCCACCATCCCCATCACTGGAACATGTATCAACCTGGCCAGGAGCTTGGGAGCGGCTGTCATTTTCAACAGTGATCATGCTTGGGATCATCATTGGGTCTTCTGGGTTGGACCATTTATTGGAGCTGCACTTGCTGCACTGTATCACCAGATAGTGATAAGAGCTATTCCATTCAAGAGTAGAGCTTA 923 0.4713 MEGKDENVRLRANKFTERQPIGTSAQTKDYNEPPPAPIFEPQELHLWSFWRAGIAEFIATFLFLYITLLTVMGFARTPKKCASVGVQGIAWAFGGIIFALVYCTTGISGGHINPTVTFGLFLARKLSLTRALFYMVMQCLGAICGASVVKGFQPNLYEKLGSGANVVNHGYTKGDGLGAEIVGTFLLVYTIFFATDAKRNARDSHVPENMARTKNDAYRHAKPEEQQEEILAPLPIGFAVFLVHLATIPITGTCINLARSLGAAVIFNSDHAWDHHWVFWVGPFIGAALAALYHQIVIRAIPFKSRA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01824 307 PANTHER AQUAPORIN PIP1-2 1 207 - -
Bva08g01824 307 Pfam Major intrinsic protein 225 294 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 Pfam Major intrinsic protein 44 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 277 297 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 237 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 SUPERFAMILY Aquaporin-like 47 299 IPR023271 -
Bva08g01824 307 CDD MIP 51 297 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva08g01824 307 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Bva08g01824 307 Gene3D Glycerol uptake facilitator protein. 36 305 IPR023271 -
Bva08g01824 307 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 222 306 IPR034294 -
Bva08g01824 307 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 207 IPR034294 -
Bva08g01824 307 PANTHER AQUAPORIN PIP1-2 222 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01824 Bva-Chr8 12327817 12334655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01824 1 307 Major Intrinsic Protein MIP AT3G61430 77.597 7.55e-165 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01824 K09872 - qsu:112034571 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01824 08 12327817 12334655 Bva08g01824 08 12327817 12334655 ECH