Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01820 ATGGCAGTGGTGAGTCCTGTGCCAGCAACTCCACAAAGAACAACTTCTGTGAGGCTGCCCTATAATACTGGCGTTACAGGAACTATGGCTAGTAGGGTAGACATTGTAGAGGAGCCCGTTCCAACTGTGGTTGACGATATAATCTATGTTGCTGTAGCAAACGATGTGAAAGATAGCAAAACAAATCTGATATGGGCAATACAAAACTCCGGAGGGAAAAGGATTTGCCTGCTCCATGTTCATGTACCTGCAACAATGATTCCCTTGATGGGAACAAAATTTCGCGCGGATTCACTGCAAGAACAGCAAGTTCAAGCATACCGGGATGTTGAAAGGAAAGACATGCATAAGAATCTGGATGAGTATCTTTTAATCTGTCAAAAAATGGGGGTACGAGCCCAGAAACTGCATATTGAAATGGATTCAATTGAGGAAGGAATTGTAGAACTCATCACGCAACATGGCATCCGAAAACTTGTTATGGGTGCAGCATCTAATAGGAATTATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATCTATGTACGTGACAAAGCTCCAGCTTCTTGTCTTATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATTCCAGTTTAGAGGTTGGACCTCCTTCGCTGCAGCAAATGCCAAACTCTGAAGCTGGACGGTCACTCCCCTTGAGGTCTCAATCTATAGCAGTGGGCCAGAATCGTCAAGAAAGACTCACTGATTCAGGGTTGTTTCGCAGAGCAAGGTCTGCCTGTGATGGGCAGGGAGGTTGTGCAATGTCTATTCTAGAAGGCGCTGAAGGGTTTTCAACTCGCAGTAACAGCTTGGTTCAAGAATTAAGTACTGATGAATCAGATAGGCTGTCAAGAAGGAGTTCTTCAGTTTTCTCAGTGCATTCTGACAGGAGTACAATGGAATCAGCATTGAccccaaatttaattattgaaggGAGCGAGAATTTATCAAACTTGAGGGaactttctttaattaaagcaGATCTTTGTCGCTCATCTCCTCCTAGTGTACTgCAGGATGGAGGAACAGATGATCCTCTCTTTGATCAGCTTGAACAGGTCATGGCTGAAGCTGATAATGCTAGGTGGGATGCATATCAAGAAACTGTTAGGCGTGGGAAAGCTGAGAAAGATTCCATTGAGGCTATTCGCAGGGCCAAAGCCTCTGAAAGCTTGTATACAGAGGAGTTAAAACTGAGGAAGGAGGTGGAGGAAGCactagaaaaacaaaaagtagaaCTTGAAAGGATGAAGAATCAGCATGACGAAGCTAAGGAAGAACTCCGACTTGCACTAGATCAAAAATCAACACTAGAGAGTCAAATTGTGTCAAGTGAACTTACGGTCAAAGAGTTGGAGCAGAAGATTATATCTGCAGTGGATCTGTTACAAAGTTACAAGAAAGAACGAGATGAGTTGCAGATGCAGCGTGATACTGCATTGAGAGAGGCTGAGCAGTTGAGGGAAAGACAAGGGCAGGCCTCAACCTCGAGGACACATGAGCTTCAATTGTATTCAGAGTTCTCTTTTGCAGAAATTGAAGAAGCAACAAGTAACTTCAATCCATCCCTAAAGATTGGTGAAGGTGGTTATGGTAGTATATATAAAGGTCTCCTGCGACATACTGAGGTGGCTATAAAGATATTACACCCAAGCAGCTTGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGTAAATTACGGCATCCCAATCTCATCACACTTATAGGAGCCTGCCCAGAATCCTGGACTCTTGTTTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGGCTCAGCTGCAAGGGCAACACACCACCATTATCATGGCAAACTCGAATTCGCATTGCTACAGAGCTGTGCTCTGCCcttatctttcttcattccagtAAACCTCACAGCGTTGTGCATGGTGACTTAAAACCTGCAAATATTCTCCTCGATGCCAACCTTGTTAGCAAACTTAGTGACTTTGGAATCTGCCGTATATTATCTCTTGAGTCTCCAAGTAATAATGCTACACAGTTCTGGAGAACTGACCCAAAGGGTACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTAACTCCAAAGTCAGATGTCTATTCATTTGGAATCGTTTTATTAAGACTGTTGACTGGGAAACCAGCCTTGGGAATAACAAAGGAAGTGCAATATGCATTAGATTCTGGAAAATTGAAATCCCTTTTGGACCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCATTGAGGTGTGCCGAGATGAATAGAAAGAGTCGGCCGGACCTTTATTTAGATGTATGGAGAGTACTAGGACCGATGAGGGCATCTTCTGGAGGCACAAACTCTTTTGGACTTGGTTCTCAAGGACTTTACCAGCCtccttcatattttatttgtccaATCTTCCAGGAAGTCATGCGAGATCCTCATATTGCTGCAGATGGTTTCACGTATGAAGCTGAGGCTATACGAGGATGGCTGGACAGCGGTCATGACACTTCACCAATGACAAATTCTAAGCTTGCGCATAGCAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAGTCACTG 2669 0.4283 MAVVSPVPATPQRTTSVRLPYNTGVTGTMASRVDIVEEPVPTVVDDIIYVAVANDVKDSKTNLIWAIQNSGGKRICLLHVHVPATMIPLMGTKFRADSLQEQQVQAYRDVERKDMHKNLDEYLLICQKMGVRAQKLHIEMDSIEEGIVELITQHGIRKLVMGAASNRNYSRRMMDLRSKKAIYVRDKAPASCLIQFICKGHLIHTRDSSLEVGPPSLQQMPNSEAGRSLPLRSQSIAVGQNRQERLTDSGLFRRARSACDGQGGCAMSILEGAEGFSTRSNSLVQELSTDESDRLSRRSSSVFSVHSDRSTMESALTPNLIIEGSENLSNLRELSLIKADLCRSSPPSVLQDGGTDDPLFDQLEQVMAEADNARWDAYQETVRRGKAEKDSIEAIRRAKASESLYTEELKLRKEVEEALEKQKVELERMKNQHDEAKEELRLALDQKSTLESQIVSSELTVKELEQKIISAVDLLQSYKKERDELQMQRDTALREAEQLRERQGQASTSRTHELQLYSEFSFAEIEEATSNFNPSLKIGEGGYGSIYKGLLRHTEVAIKILHPSSLQGPLEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLSCKGNTPPLSWQTRIRIATELCSALIFLHSSKPHSVVHGDLKPANILLDANLVSKLSDFGICRILSLESPSNNATQFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIVLLRLLTGKPALGITKEVQYALDSGKLKSLLDPLAGDWPFVQAEQLARLALRCAEMNRKSRPDLYLDVWRVLGPMRASSGGTNSFGLGSQGLYQPPSYFICPIFQEVMRDPHIAADGFTYEAEAIRGWLDSGHDTSPMTNSKLAHSNLVPNRALRSAIQDWLQSH 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01820 889 CDD STK_N 47 200 - -
Bva08g01820 889 Coils Coil 412 502 - -
Bva08g01820 889 PANTHER U-BOX KINASE FAMILY PROTEIN 24 888 - -
Bva08g01820 889 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 173 - -
Bva08g01820 889 SUPERFAMILY Protein kinase-like (PK-like) 512 788 IPR011009 -
Bva08g01820 889 ProSiteProfiles Protein kinase domain profile. 532 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01820 889 PANTHER OS02G0152300 PROTEIN 24 888 - -
Bva08g01820 889 SMART Ubox_2 822 885 IPR003613 GO:0004842|GO:0016567
Bva08g01820 889 Gene3D HUPs 48 195 IPR014729 -
Bva08g01820 889 SUPERFAMILY RING/U-box 815 888 - -
Bva08g01820 889 CDD RING-Ubox_WDSUB1_like 823 864 - -
Bva08g01820 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 889 IPR013083 -
Bva08g01820 889 Gene3D Phosphorylase Kinase; domain 1 502 604 - -
Bva08g01820 889 SMART serkin_6 532 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01820 889 Pfam Protein kinase domain 536 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01820 889 Pfam U-box domain 820 889 IPR003613 GO:0004842|GO:0016567
Bva08g01820 889 ProSitePatterns Protein kinases ATP-binding region signature. 538 559 IPR017441 GO:0005524
Bva08g01820 889 ProSiteProfiles U-box domain profile. 818 889 IPR003613 GO:0004842|GO:0016567
Bva08g01820 889 Gene3D Transferase(Phosphotransferase) domain 1 605 803 - -
Bva08g01820 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01820 Bva-Chr8 12295595 12301971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01820 354 889 U-box Gene Family AT2G45910 64.925 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Bva08g01820 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01820 - - gmx:100807515 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01820 08 12295595 12301971 Bva08g01820 08 12295595 12301971 ECH
Bva02g01902 02 20582060 20587763 Bva08g01820 08 12295595 12301971 ECH