Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01806 ATGGATCGGGGGGATCAAATCGACTTGCCTGGGTCTGCATCTTACTATATACAGAGAGGAATAGCTGGTTCTGGAGCACAGCCTGAGCTACCAGGTATTCGTCCCTTGTCTAATCCAAATGTACCATTTCAACCTGGCATTGGAGTTGGTACCATGCGATCCTCCCTACCATTAGAATCTTCATCAGTTTCACCGCATGGTGTCAATGTGGGTGGTCCTGCTGGGGCGCCACCTGGGGAACCTGCCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGGCCTGAGGGGAGTGTATCATTGGCATTGACTCCATCACTGTCTAGTCATCCTGGAACCATGTCACAAAGCCAGAAACGCGGTAGAGGTCGCCCACCAGGGTCAGGGAAGAAACAGCTGTTGGGTTCTCTTGGAGTATTAACGTCTGGTTCAGTTGGGATGGGTTTTACTCCTCATGTCATTGCCATTGCAGTTGGAGAAGACATTGCTACAAAAATAATGGCATTTTCACAACAGGGGCCGAGAGCTGTATGCATTTTGTCAGCCACTGGTGCTGTCTCCACTGTGACGCTTCACCAGCCGTCAACTTCTGGGGGCACCGTCACATATGAGGGGCGTTTCGAGATATTGTGCCTTTCAGGCTCTTACTTGCTTACTGATAGTGGTGGCTCCCACAACCGAAGTGGCGGACTCAGTGTCTCCCTTGCCAGCCCTGACGGCCGCGTCATCGGCGGAGGAGTTGGCGGAATGCTCATTGCAGCAAGTCCTGTTCAGGTTATTGTTGGGAGCTTTGTGTGGGGAGGAGGATCAAAGgcaaagaacaagaaaggGGAAGGTGGTGGTGAAGGTGCAGAAGCTTCTACGGACTCAGATCATCAGGCAGTTCATAATACTCCAATGGCATTGAATAGCATTTCTCAAAAtctaaatcaaaatcaaaatcttactCCAACCTCATCTTCTTTAGGCGCTTGGCCTGCGTCGCGTCCTTTGGATATGCGCAACTCTTCTTCCCATGTTGACATTGATTTAATGCGCGGGTG 1040 0.4904 MDRGDQIDLPGSASYYIQRGIAGSGAQPELPGIRPLSNPNVPFQPGIGVGTMRSSLPLESSSVSPHGVNVGGPAGAPPGEPAKRKRGRPRKYGPEGSVSLALTPSLSSHPGTMSQSQKRGRGRPPGSGKKQLLGSLGVLTSGSVGMGFTPHVIAIAVGEDIATKIMAFSQQGPRAVCILSATGAVSTVTLHQPSTSGGTVTYEGRFEILCLSGSYLLTDSGGSHNRSGGLSVSLASPDGRVIGGGVGGMLIAASPVQVIVGSFVWGGGSKAKNKKGEGGGEGAEASTDSDHQAVHNTPMALNSISQNLNQNQNLTPTSSSLGAWPASRPLDMRNSSSHVDIDLMRG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01806 346 CDD DUF296 149 263 IPR005175 -
Bva08g01806 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 264 IPR005175 -
Bva08g01806 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 324 - -
Bva08g01806 346 MobiDBLite consensus disorder prediction 100 121 - -
Bva08g01806 346 ProSiteProfiles PPC domain profile profile. 144 286 IPR005175 -
Bva08g01806 346 MobiDBLite consensus disorder prediction 270 291 - -
Bva08g01806 346 MobiDBLite consensus disorder prediction 309 334 - -
Bva08g01806 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 324 IPR039605 GO:0003680
Bva08g01806 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 266 - -
Bva08g01806 346 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Bva08g01806 346 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Bva08g01806 346 MobiDBLite consensus disorder prediction 23 133 - -
Bva08g01806 346 MobiDBLite consensus disorder prediction 309 346 - -
Bva08g01806 346 Gene3D - 150 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01806 Bva-Chr8 12165980 12170255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01806 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.731 7.55e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01806 - - gmx:100799791 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01806 08 12165980 12170255 Bva08g01806 08 12165980 12170255 ECH