Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01803 ATGAACAACAGAGCAAGATACCCACCTGGGATCGGTATGGGTCGTGGGGGAGGGATGAACACGAACCCTGCTTTTCAGCCGAGACCCCCTCAGCAGCAGTATGTGCAAAGGCATTTCGTGCAAAATCAACATCAGTACCAAAACCAACAACACCATCAAcaccaacaacaacaacagcaacacCAGCACCAGCAGCAACAACAGTGGCTAAGAAGAACGCAATTGGGTGGTAACGAGGCCTCCGTGGTTGATGAGGTGGAGAAGACTGTGCAGTCTGAAGCCGTTGACCCCAGTTCACAAGATTGGAAGGCAAGACTAAAGATACCACCACCTGATACACGCTACAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTTATGGGAATTTATGAGAAGGGATTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATTCCAATAGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACCGCTGCCTTTTGCGTTCCTGCATTGGAAAAAATTGATCAGGACAACAATGTTATTCAAGTTGTTATACTAGTACCAACAAGAGAGTTGGCTCTGCAAACATCTCAAGTGTGTAAGGAACTGGGGAAGCATTTGAATATTCAAGTTATGGCTACAACAGGAGGAACCAGCCTGAAGGATGATATCATGCGTCTATATCAACCAGTTCATTTACTTGTGGGAACCCCAGGAAGAATTTTAGATCTTGCAAAAAAGGGTGTTTGCATTTTGAAATATTGCAACATGCTTATTATGGATGAGGCTGATAAGCTTCTATCCCCTGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTGCCTCCAACTCGCCAAATCCTCATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCAAAAACCATATATAATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTGCACTGCTTGAATACCCTTTTCTCTAAGCTACAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGAGTTGAGCTCCTtgccaaaaaaataacagaacTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGTAATGGTGCATGTAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATTCAGGCGGTCAATGtggttattaattttgattttcccaAGAACTCGGAAACTTATCTGCACAGGGTTGGTCGGTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAACTTATATAGGATTGAACAAGAACTTGGCACTGAGATAAAGCAAATTCCACCACACATTGATCAGGGGATTTATTGCCGGTG 1502 0.4028 MNNRARYPPGIGMGRGGGMNTNPAFQPRPPQQQYVQRHFVQNQHQYQNQQHHQHQQQQQQHQHQQQQQWLRRTQLGGNEASVVDEVEKTVQSEAVDPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMATTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKYCNMLIMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQGIYCR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01803 500 CDD SF2_C_DEAD 338 467 - -
Bva08g01803 500 MobiDBLite consensus disorder prediction 1 30 - -
Bva08g01803 500 Gene3D - 331 499 IPR027417 -
Bva08g01803 500 Gene3D - 100 330 IPR027417 -
Bva08g01803 500 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 15 500 - -
Bva08g01803 500 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 15 500 - -
Bva08g01803 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 480 IPR027417 -
Bva08g01803 500 MobiDBLite consensus disorder prediction 43 69 - -
Bva08g01803 500 Pfam DEAD/DEAH box helicase 151 315 IPR011545 GO:0003676|GO:0005524
Bva08g01803 500 SMART helicmild6 377 458 IPR001650 -
Bva08g01803 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 497 IPR001650 -
Bva08g01803 500 CDD DEADc_DDX6 128 328 - -
Bva08g01803 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Bva08g01803 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 327 IPR014001 -
Bva08g01803 500 SMART ultradead3 145 341 IPR014001 -
Bva08g01803 500 Pfam Helicase conserved C-terminal domain 352 458 IPR001650 -
Bva08g01803 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01803 Bva-Chr8 12154059 12159283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01803 126 493 Eukaryotic Initiation Factors Gene Family AT3G19760 39.459 1.85e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01803 K12614 - tcc:18614173 873.618