Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01802 ATGGGAAGGACTCCCTGTTGTGACAAGAGGGGTTTGAAGAAAGGACCGTGGACAGCTGAAGAGGATGAGATTCTTGTTAACTTTATCAAGAAGAATGGTGGACATGGAAGCTGGCGTTCTCTCCCAAAGTTGGCAGGTCTTCATCGCTGCGGGAAGAGTTGCCGGCTTAGGTGGACGAACTATCTAAGACCTGATATCAAACGTGGTCCTTTTACTAGTGAGGAAGAGAAGCTTGTCATACAGCTACATGCCATCCTTGGCAATAGGTGGGCTGCTATTGCTGCTCAACTACCAGGAAGAACAGACAATGAGATAAAGAATTTATGGAATACTCACTTGAAGAAGCGCCTGGTTAGCATGGGACTAGACCCACAAACGCATGAGCCAGTGACCTCTCGTTGCCCAATTGACAAGGCAAATGCCTCAGTTTTCACTCGTCACATGGCACAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCAAGGCTCTCCAGAGAGTCATCTCTGTTCAGTCCCTCAAATGCCAAAGCTGATTCTGACTATTTTCTCCGCATTTGGAACTCTGAAGTCGGTGAATCGTTTCGTAAGATTCACAAGGAAGATGCTAAAACTGCATGCTGTAGCCCCATTTCTCCAGGTTCTGCCATAACCACAGAAGTGGCACTGAACCCAGTAGGGTCTTCAACCCCGGCTAGCAATTTGAATGAAGAGTTTGAGTGCAGAAGCAGCAGCAAGGCATATGCTGAAGATGTTAAGAATGGATGTGACTCATCAAGCTCTAATGACTTGGAAGATTCTTCAGACACTGCATTGCAGCTGTGGTTAGATTTTCCCATAAACAATGACATGAGCTTCATGGAAGGGAACTCTTATATTTGCCCCCTTTA 884 0.4661 MGRTPCCDKRGLKKGPWTAEEDEILVNFIKKNGGHGSWRSLPKLAGLHRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKRLVSMGLDPQTHEPVTSRCPIDKANASVFTRHMAQWESARLEAEARLSRESSLFSPSNAKADSDYFLRIWNSEVGESFRKIHKEDAKTACCSPISPGSAITTEVALNPVGSSTPASNLNEEFECRSSSKAYAEDVKNGCDSSSSNDLEDSSDTALQLWLDFPINNDMSFMEGNSYICPL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01802 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva08g01802 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva08g01802 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 288 - -
Bva08g01802 294 Gene3D - 11 68 - -
Bva08g01802 294 CDD SANT 16 62 IPR001005 -
Bva08g01802 294 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva08g01802 294 SMART sant 13 64 IPR001005 -
Bva08g01802 294 SMART sant 67 115 IPR001005 -
Bva08g01802 294 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva08g01802 294 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Bva08g01802 294 Gene3D - 70 117 - -
Bva08g01802 294 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva08g01802 294 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva08g01802 294 CDD SANT 70 113 IPR001005 -
Bva08g01802 294 PANTHER PROTEIN ODORANT1-LIKE 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01802 Bva-Chr8 12150940 12152720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01802 1 288 MYB Transcription Factor Family AT3G61250 65.763 5.08e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g01802 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01802 K09422 - qsu:112007704 434.491