Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01795 atgtctTTCACTGGAACTCTCGATAAATGCAAGGCCTGCGACAAGACTGTTTATGTGGTCGACATGATGTCTCTGGAAGGTGTTCCTTACCATAAGAACTGCTTCAAATGCAGCCACTGCAATGGAGTTCTTACGATGAGCACCTACTCCTCCATGGATGGTGTCCTCTACTGCAAGACCCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTCCAGAACGCAAGGGCTTCTGAGAGGAACGCTGACATGAATAGGACACCCAGCAgactctcttccttgttcagTGGCACCCAGGACAAATGCTCAGTTTGCTCAAAGACAGTTTATCCGCTGGAAAAGGTGACACTGGAGGGAGAATGCTACCACAAATCATGCTTCAGGTGTGCTCATGCAGGGTGCCCTCTGACCCATTCCAACTATGCTGCCCTGGATGGTGTCCTGTACTGCAGGGTACATTTTGCTCAACTTTTCATGGAAAAGGGGAACTACAGCCATGTGCTGCAGGCTGCTTCACACAAGAGGACTGCCAGTGGCAGCACACCACCTCCTGAACTTGCTGAAGATGAGCAGCCACATGAGCCAGAAGAGTCCAAGGACAAGGAGGAGAAGGCAGAAGATGAGAAAGATGATTG 647 0.473 MSFTGTLDKCKACDKTVYVVDMMSLEGVPYHKNCFKCSHCNGVLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQNARASERNADMNRTPSRLSSLFSGTQDKCSVCSKTVYPLEKVTLEGECYHKSCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQAASHKRTASGSTPPPELAEDEQPHEPEESKDKEEKAEDEKDD 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01795 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Bva08g01795 215 PANTHER OS06G0237300 PROTEIN 1 211 IPR045268 GO:0051015
Bva08g01795 215 MobiDBLite consensus disorder prediction 191 215 - -
Bva08g01795 215 Pfam LIM domain 106 161 IPR001781 -
Bva08g01795 215 Pfam LIM domain 10 65 IPR001781 -
Bva08g01795 215 Gene3D Cysteine Rich Protein 100 170 - -
Bva08g01795 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Bva08g01795 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bva08g01795 215 MobiDBLite consensus disorder prediction 176 215 - -
Bva08g01795 215 Gene3D Cysteine Rich Protein 5 72 - -
Bva08g01795 215 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Bva08g01795 215 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Bva08g01795 215 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bva08g01795 215 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Bva08g01795 215 SMART lim_4 9 61 IPR001781 -
Bva08g01795 215 SMART lim_4 105 157 IPR001781 -
Bva08g01795 215 CDD LIM1_SF3 6 68 - -
Bva08g01795 215 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01795 Bva-Chr8 12115566 12117267 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bva08g01795 LIM 3.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01795 - K09377 twl:119983128 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01795 08 12115566 12117267 Bva08g01795 08 12115566 12117267 ECH