Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01771 ATGCGCAATTCAACCCCACCACGTTCTTCTCCACCTGGTGCCGCCGTCGACAGCTCACCCCTCCTCAGCTACTCCTTCTCTGACCAATTCCGCCGGAGCAGCCGCCTCATACACCGTACTCCGCCGCCTTTACGCACTGCTGCGCGGTTCTTCCGTCGCATTAGTGGGCGCCGGATGATGCTACGGGAGCCCTCGGTGCAGGTCCGGGAGAACGCGGCGGAGCAACTGGAGGAGCGGCGGAGCAACTGGGCTTATTCAAAGCCGGTGATCATGTTGGATATTTTGTGGAACATGGCGTTTCTAGCAATTGGGGTCACTCTATTGGGACTGAGCACCGAGGAAAACCCATCTGTGCCTTTGAGGCTGTGGATTGTTGGCTACTTGTTGCAGGGTGTGTTTCACTCTCTGTGTGTGATTGTGGAATATAGGCTAAGGAGCCAAGCAGGTACTACCGGGAACTGGGGAAGTGGTGGAGACACTAATTTTAGTTCTGGGAGTGATGGAGAGGATTTTGCTACAGAGCAGCTGCTGGAGAATGACGATAGCAGCATTACAAAGCACATAGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTCTAGGATTCTACTGGGTAACTTCTGGCGGCCAGAGTTTGACAAGTGATTCACCTCAGCTTTACTGGCTTTGTATTACATTTCTTGCTTTCGACGTTGTGATTGTAATGATCTGTGTCGCTGTTGCGTGCCTTATTGGTATTGCTGTTTGCTGTTGCTTGCCGTGCATAATTGCTGTCTTGTATGTCGTTTCAGATCAGGAAGGAGCAACCAAAGAAGAGATTGATCGGTTGCCAAAATACAAGTTCCGGAGGGTCGAGGAACttgagaaagagaataatGATATTCAAGAATCTTCCAGAGGAATAATAACAGAATGTGATAGTGATACACCTGTAGAACATGTTCTTCCCTTGGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTACGATGATGGAGCTGAACTTAGAGAACTTCCCTGTAACCACCATTTCCATTGTGCCTGCATTGACAAGTGGTTGCACATAAATGCTATCTGCCCTCTCTGCAAGTTCAACATTTTGAGTAATGACAGCAGCCAAGAAGTtta 1133 0.4819 MRNSTPPRSSPPGAAVDSSPLLSYSFSDQFRRSSRLIHRTPPPLRTAARFFRRISGRRMMLREPSVQVRENAAEQLEERRSNWAYSKPVIMLDILWNMAFLAIGVTLLGLSTEENPSVPLRLWIVGYLLQGVFHSLCVIVEYRLRSQAGTTGNWGSGGDTNFSSGSDGEDFATEQLLENDDSSITKHIESANTMLSFIWWILGFYWVTSGGQSLTSDSPQLYWLCITFLAFDVVIVMICVAVACLIGIAVCCCLPCIIAVLYVVSDQEGATKEEIDRLPKYKFRRVEELEKENNDIQESSRGIITECDSDTPVEHVLPLEDAECCICLSAYDDGAELRELPCNHHFHCACIDKWLHINAICPLCKFNILSNDSSQEV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01771 377 CDD RING-H2_RNF111_like 323 367 - -
Bva08g01771 377 PANTHER TARGET OF ERK KINASE MPK-1 9 375 - -
Bva08g01771 377 SUPERFAMILY RING/U-box 314 371 - -
Bva08g01771 377 Pfam Ring finger domain 323 365 IPR001841 -
Bva08g01771 377 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Bva08g01771 377 SMART ring_2 324 364 IPR001841 -
Bva08g01771 377 Coils Coil 286 306 - -
Bva08g01771 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 371 IPR013083 -
Bva08g01771 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01771 Bva-Chr8 12025527 12029288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01771 9 375 C3H Transcription Factor Family AT1G68070 46.113 1.70e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01771 - - qsu:111991620 550.821