Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01751 ATGGAAATGGCTTCCAGTCCTCGCACCGTGGAGGAGATCTTTAAGGACTATAGTGCTCGTAGAGCTGGTGTTGTTCGTGCTCTAACTCAAGATGTTGATGAATTTTATGGGCTATGTGATCCAGATAAGGAGAACTTGTGTCTTTATGGACACCCAAATGAATCCTGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCACCAGAGCTTCCTGAGCCAGCTCTGGGAATCAACTTTGCTAGAGATGGCATGAATCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTGGGAGCACGGCTTAACCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGGAAGCCAGCAAAGGACAAGCCCACTGTGGACAGTGGAAGCAAGTCTCGGGGCAGCACCAAGAGATCCAGTGACGGGCAAGTTAAAAGCAACCCAAACCCAAAATATGCCGACGATGATAATGAAGAGGACGAAGATGAGCATACCGAAACCCTTTGTGGGAGCTGTGGTGGAGATTACAATTCAGATGAGTTTTGGATTTGCTGTGATATCTGCAACAGATGGTTCCATGGGAAATGTGTGAAGATCACTCCTGCAAAGGCTGAGAGCATTAAGCAATACAAATGCCCATCATGCAGCTTGAGGCGGGGTAGGCCATA 725 0.4731 MEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPAKDKPTVDSGSKSRGSTKRSSDGQVKSNPNPKYADDDNEEDEDEHTETLCGSCGGDYNSDEFWICCDICNRWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01751 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Bva08g01751 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Bva08g01751 241 MobiDBLite consensus disorder prediction 136 179 - -
Bva08g01751 241 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 240 - -
Bva08g01751 241 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
Bva08g01751 241 Pfam PHD-finger 188 235 IPR019787 -
Bva08g01751 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Bva08g01751 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Bva08g01751 241 CDD PHD_AL_plant 187 237 IPR044104 -
Bva08g01751 241 SMART PHD_3 187 235 IPR001965 -
Bva08g01751 241 PANTHER CPG BINDING PROTEIN 3 240 IPR045104 GO:0006355|GO:0042393
Bva08g01751 241 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01751 Bva-Chr8 11831422 11835009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01751 4 240 Alfin-like Transcription Factor Family AT5G05610 75.210 1.35e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bva08g01751 Alfin 2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01751 - - gmx:100782478 449.514