Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01685 ATGCTCTCTGCTCAAGATATGAAGGATACAACCCCTGGCAATGTTGAATATGAAACTTTTGATTCTATTGGTCCTGTTGCTGGTGGTGATACTGGCATCACAATCATTATGGTGGACAAATTAGTGGAATTCTCATATGAAGAACTAGCCAATGCCACAGATAACTTCAGTGTAGCTAATAAAATTGGTCAAGGTGGTTTTGGAGCTGTCTACTATGGAGAGCTGAGAGGAGAGAAAGTTGCAATTAAGAAGATGGAAATGAAAGCATCTAAAGAGTTTATTACTGAAGTGAAAGTCTTGATGAATGTTCATCACTTGCTTGTTTTGGTCTCCTCTACTAATGTTTTGCATGCAGGACGTAATGTTATTATTTCAGAATCTGAAAAGCTTAAAGTAATTAATGACAGCATTACAATTGCTCAATCCATAGTGCTTGCTGATGCAATTGAGAATGCTGGTGCAATGCTAATTCAAGAGGTTGCAAGTAACATGAATGATTTGGCTGGCGATGGTACTAGCACTGCAATTATTTTGGCTCGAGCGATGGTAAAATCTGGACTGTTAGCAGTCACATTTGGGGCTAACCCCATTTCTTTGAAGAAGGGAATGGAAAAGACCGTAAAAGATTTGGTCAAGTTCTTGAAGAAGAGAAGTCTTGCTTCTGCTTATTTAAGTTGTTCAGCCAACTTGTCTTTGCTTCACCAGAAAATATTGaagcttttctctctctcttttacaGCTGTTGCCTCGATTTCTGCTGGAAATGATGAGTTTGTCGtgCCTGACATATCTAAAGCTCCAAATTTAGAGGAATTGTGGCTTGATGGCTGCTTGAATTTAACTGAAGTGCATGACAACGTTGGCAAACATAGCAAACTTACAGTACTGGATGTTGCTGGATGCACCAAGCTTAGAAGTTTTCCTGATCACATCATGATGAAATCTCTTGAAATTCTTAACCTCTCAGGTTGCTCAAGTCTCAAGATTTTCCCAGAAATATCAGGGATGatggaaaatttaaaatatgttgacTTGGATTATAGTGGCATCCAAAGCTTATCATTTTCCATTCAAAATCTTATTGGACTTGAAAGAATAAGTCTCTTCTTCTGCAATGGGCTTTCAAGGCCACCAAGTAGCATTCTCACTTTGCCAAAACTTTACGCGTTGGATGTTGATGGATGTagtgaattttcattttactgCGGAAGTGAAGAACAAGAACAGGAGCAAGAAAGAATCAGCCCAATATCAGAGCGTTTTAAAGACTGTGAAAGGGAAGAACAAGTACAAGATCAAAGATACAGATGTATTTACTTGAGGGATTGCAATTTTCTCCCTACAAAGCTTCAATACGTATCTAATTGGGAAAGTCTATCTCCACAATCTTGTAATTTCATGATTCTTCCCGCAAGCATCAAGGAATTTCCCTTTCTGAAAATACTTGAATTGATTCAATGCAAGCAGCTTTGGGAAATTAGAGAGCTTCCGCCCTCTTTAAAGAAACTTAAATTGTATAGATGCGAGCAAATTCAAGAAATAAGAGAGCTTCCATACTCTTTGAAGAAACTTCAATTAATTGAATGCAAGCAACTTCAAGGAGTAAGAGAGCTTCCTCTGAACACAGAAGAAGTCCATGTAGCAAACTGTGCATTGTTTACTTCCGAGTGTTTGAGCATCTTAAGAATTGAGAAATTCCATGAGGTTAGGGGCAAAGTCATCGTTCTGCCAGGATCAAGGATTCCCGGATGGTTGGACTATTACAACATGGGTCCATCACTGTCTTTCTGGTGTCGCGAAAAATTTCCATCTATTGCACTGTGTACAATTGAATCCACAGCAGATAAATTGGAGTTTGTAAAAGGGATGGGAGCTTATGTATACGAGCAGGAAAATAACATAGAGAGCATGTGTTTCACAATTCTGTCTAATCATCCAGTAGATATGAAATTTGCTGATTTTGAGGTACAAGTTCGTCCCTCTATCAAATACTTTGTTCCACTGCTAGCAAAATTGCTTCGTCCTGAAGACTACGAGACATGGTATGACGACTATTTGATTGACGACTGCATGACATTGTATGACGACGATTACCTCGTTCCTTCTATATGTGAGATGATATGGAACATGCAAGCTCTTCcgataataaaaatactgttgtggaaaattttgttagataAAACAGAACTGCCAACTTGTTATAAAAGGcttttcaaattgaaatttgttGATGACCCGCTCTGTCCTATTTGTGGGGAGGACGGTGAAACCATTGAACATGTGTTCCTCTTGTGCAAATGGGCTTCACGCATTTGGTCTCAAGCTGAATTGCATTGGAATGTTGATTCGAATTACTTGTATGGGAAGATGGAAGATTGGCTTTGGAAGAAgattgatgaaaatgaaacgtTACATCCAAATTATAATCGAACAAGTGGTCTTGTTGGGTGCATTTGTTGGGCTATTTGGAATGAAAGGGAGGATTTCATTTCTGGAGACCAACCTGTTTGTTGGAAGCGTGCATTAGACAGAGCCCATTCAATGCATAAACAATGCTTGGAACAGACCATATTTCCCTGGCCTTGGTTTACTTATAAGATTGGACCCGAAAAGTTTTTTTTGCCAGCAACGAGTCTTCCGGCATGGATCAACCATCGTAGCAAAGGTCCTTCACTGTCTTTCTGGTGTAGGAAAAACTTTCCATCCATTGCTTTGTGTGCTATTGTGTCTTCTCCAAGGCGCACTTCATTCCAAGTCCAAGATATCGTCGTGGTCATCAATGACACTGAAAAGATCACTCTTGATACAGGACTTCGTCATCGAAGATTAGTGTTATTGAGAGATCATATACTAATGTTCGATTTAGAAGCACTAATGAATAGGCCTATGGTGGATAGAATGACTATAAAGCATGGATGGAATCATGTTGAGATTTCAGGTATCACGTGTTTACAAGACTTTGTTACTGAGATGGGAATTCATGTATACAAGGAGGGGAATATTATGGAGGACATCAGTTTCATAAGACCTAATCCTCTTCCACGGAGGACATTAGATGATTTGGAGATTGGAAGACTATCGGAGAAACCAGTGCCCATGAGCCAGTGTGTACAAGAAAATCATCAATTAGAGCCAGAATCCCTTCACCAACGCCAGGAGCTGAATGATGCAAGCGAGGGCGTAGAGTTGGCACCAACTCCAAAATGCTGTCGTCTAAATTTGAAACAACTCta 3233 0.382 MLSAQDMKDTTPGNVEYETFDSIGPVAGGDTGITIIMVDKLVEFSYEELANATDNFSVANKIGQGGFGAVYYGELRGEKVAIKKMEMKASKEFITEVKVLMNVHHLLVLVSSTNVLHAGRNVIISESEKLKVINDSITIAQSIVLADAIENAGAMLIQEVASNMNDLAGDGTSTAIILARAMVKSGLLAVTFGANPISLKKGMEKTVKDLVKFLKKRSLASAYLSCSANLSLLHQKILKLFSLSFTAVASISAGNDEFVVPDISKAPNLEELWLDGCLNLTEVHDNVGKHSKLTVLDVAGCTKLRSFPDHIMMKSLEILNLSGCSSLKIFPEISGMMENLKYVDLDYSGIQSLSFSIQNLIGLERISLFFCNGLSRPPSSILTLPKLYALDVDGCSEFSFYCGSEEQEQEQERISPISERFKDCEREEQVQDQRYRCIYLRDCNFLPTKLQYVSNWESLSPQSCNFMILPASIKEFPFLKILELIQCKQLWEIRELPPSLKKLKLYRCEQIQEIRELPYSLKKLQLIECKQLQGVRELPLNTEEVHVANCALFTSECLSILRIEKFHEVRGKVIVLPGSRIPGWLDYYNMGPSLSFWCREKFPSIALCTIESTADKLEFVKGMGAYVYEQENNIESMCFTILSNHPVDMKFADFEVQVRPSIKYFVPLLAKLLRPEDYETWYDDYLIDDCMTLYDDDYLVPSICEMIWNMQALPIIKILLWKILLDKTELPTCYKRLFKLKFVDDPLCPICGEDGETIEHVFLLCKWASRIWSQAELHWNVDSNYLYGKMEDWLWKKIDENETLHPNYNRTSGLVGCICWAIWNEREDFISGDQPVCWKRALDRAHSMHKQCLEQTIFPWPWFTYKIGPEKFFLPATSLPAWINHRSKGPSLSFWCRKNFPSIALCAIVSSPRRTSFQVQDIVVVINDTEKITLDTGLRHRRLVLLRDHILMFDLEALMNRPMVDRMTIKHGWNHVEISGITCLQDFVTEMGIHVYKEGNIMEDISFIRPNPLPRRTLDDLEIGRLSEKPVPMSQCVQENHQLEPESLHQRQELNDASEGVELAPTPKCCRLNLKQL 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01685 1077 PANTHER CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC 118 277 - -
Bva08g01685 1077 Pfam Protein tyrosine and serine/threonine kinase 58 168 IPR001245 GO:0004672|GO:0006468
Bva08g01685 1077 Gene3D Phosphorylase Kinase; domain 1 31 117 - -
Bva08g01685 1077 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 118 277 - -
Bva08g01685 1077 SUPERFAMILY L domain-like 237 553 - -
Bva08g01685 1077 Pfam FNIP Repeat 492 526 IPR008615 -
Bva08g01685 1077 Pfam TCP-1/cpn60 chaperonin family 119 218 IPR002423 GO:0005524
Bva08g01685 1077 SUPERFAMILY GroEL equatorial domain-like 121 214 IPR027413 -
Bva08g01685 1077 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Bva08g01685 1077 PRINTS Tailless complex polypeptide 1 (chaperone) signature 164 183 IPR017998 GO:0140662
Bva08g01685 1077 PRINTS Tailless complex polypeptide 1 (chaperone) signature 130 148 IPR017998 GO:0140662
Bva08g01685 1077 Gene3D Ribonuclease Inhibitor 261 399 IPR032675 -
Bva08g01685 1077 SUPERFAMILY Protein kinase-like (PK-like) 35 107 IPR011009 -
Bva08g01685 1077 Pfam zinc-binding in reverse transcriptase 700 772 IPR026960 -
Bva08g01685 1077 Gene3D Ribonuclease Inhibitor 400 565 IPR032675 -
Bva08g01685 1077 Gene3D - 118 249 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01685 Bva-Chr8 9256941 9266486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01685 27 106 Receptor kinase-like Gene Family AT3G21630 70.000 7.75e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Bva08g01685 Cpn60_TCP1 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01685 - - ahf:112730546 222.631